Gene detail

Gene detail information of Glyur000616s00026595.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G66910.1	2.00E-74	Protein kinase superfamily protein
NR	KEH40361.1	0	receptor-like kinase [Medicago truncatula]
COG	YP_001958461.1	3.00E-21	hypothetical protein Aasi_1443 [Candidatus Amoebophilus asiaticus 5a2]
Swissprot	tr\|D7SFH9\|GPDL2_ARATH	2.00E-78	Glycerophosphodiester phosphodiesterase protein kinase domain-containing GDPDL2 {ECO:0000305} (Precursor)
trEMBL	tr\|A0A072VFM0\|A0A072VFM0_MEDTR	0	Receptor-like kinase {ECO:0000313\|EMBL:KEH40361.1}

Sequence

Transcript Sequence

>Glyur000616s00026595.1
ATGCTTGAACTGCCCGCAGATCCAGTCCCTTTAAAACTCCTCGTAAGTCACATTGATTACGGATCGCGATTCTTGATGGCACAAGATCCCAAAAACTGTCTTCCTGGACTCTTACTTAGTCTCAACTTCTCATCCATTTTTCCTTTCAAGGCTCGATTTGAGGCACCAAGCAACAACATTAGTTTTTTCGATTGTTCTTCAACAGGGCAACGACATCTGAGAAACTCCGGGCAAACAAGAGATGGTGCACAAGATATGTCATATTGCCCGATTTACGTCGCTGGCTCTTATCATGGTATCGTGGAGTCGGGCCTAGTATACTGCACCAAACTGTTTGACCGCGTTTTGCCAGTAGACGCTTCTGAGATACACTACTGGAACTCACTCTATTTGACATGGTCGGAAAGGGATTTGGACAGAGAATGCTTAGAGTGTAACCACAAATCGAAGAAGAAGACTACATTCGTTATTTTATCCGCTGTAGGTGTGACACCTGTCCTTCATTTTCGTTTGGTTTTGGGGTTTGGTGTAATCATTGGTTCAACCGTGCTGGCGCTTGTGCTCGGTGCCATCGTTCGCTTATATCGCTATTTTAAGATGAAAGGCGAGGACCATACAAGAATCGAAAACTTCTTGAGGGATTACAGGGCTTTAAAGCCAACTAGATTCTCCTATGCCGATATCAAGAGAATCACACACCAGTTTAAGGAAAAGCTTGGTGAAGGAGCTCATGGAGCTGTCTACAAAGGTAAACTATCGAGCCAAATAATGGTTGCGGTGAAGATGCTCAATAACACAGAGGGTGATGGGACAGAGTTCATTAATGAAGTGGGAACCATGGGAAAAATCCACCATGTCCATGTGGTTCGCTTGCTTGGCTTCTGCGCCGATGGATTTTACCGTGCTTTGGTCTATGACTTTTTCCCAAATGGTTCCCTGCAGAATTTCATTTCTCAATCGAATAACAAGGACACTTTTCTTGGATGGGACAAGTTGCAACAAATTGCTCTCGGCATAGCCAAAGGAATTGAGTATCTTCACCAGGGTTGTGACCAAAGAATTCTCCACTTTGACATCAACCCTCACAACGTCTTGCTAGATGACAATTTCACCCCAAAAATTTCAGACTTCGGTTTGGCTAAGCTGTGCTCGAAAAATCAAAGTACTGTATCCATGACTGCAGCCAGGGGAACATTGGGCTACATGGCACCCGAAGTTTTTTCTAGAAACTTCGGGAATGTGTCATATAAGGGAGACACACATATCCCTATTGATGAAGAGGGAGATTTTAGAATTGCAAAGAAACTTGCAATCGTGGGACTTTGGTGCATCCAATGGCACCCTGTGAATCGCCCTTCCATGAAAACTGTGGTGCAAATGCTTCAAGGAGAGGGTGACAAGTTGAAAGTTCCCCACAACCCTTTTGAGCCTTCAACTTCAACTAATGCAGCCCCTCATATGGCTGCTGCAGAACGTCTGAATTTGGAACTGGAAGTGATTCAAGAAGTAGACTAG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00616	47817	49544	+

Gene family

Gene family	subfamily
Protein Kinases Family	PPC:1.9.1

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K04733	IRAK4	EC:2.7.11.1	NF-kappa B signaling pathway	map04064
			Toll-like receptor signaling pathway	map04620
			Toll and Imd signaling pathway	map04624
			NOD-like receptor signaling pathway	map04621
			Neurotrophin signaling pathway	map04722
			Pertussis	map05133
			Tuberculosis	map05152
			Measles	map05162
			Influenza A	map05164
			Toxoplasmosis	map05145
			Leishmaniasis	map05140
			Chagas disease (American trypanosomiasis)	map05142

Gene Ontology

biological_process
GO:0006468 protein phosphorylation

molecular_function

GO:0004672 protein kinase activity

GO:0005524 ATP binding

GO:0016772 transferase activity, transferring phosphorus-containing groups

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000616s00026595.1	PF00069.20	Pkinase	234	409	5.00E-37

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.534
SRR1783600	control	0.545
SRR1783602	moderate drought stress	0.249
SRR1811619	moderate drought stress	0.260

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.117
DRR006520	Root Summer glycyrrhizin high producing strain	0.070
DRR006521	Root Winter glycyrrhizin high producing strain	0.450
DRR006522	Root Winter glycyrrhizin high producing strain	0.654
DRR006523	Root Summer glycyrrhizin low producing strain	0.363
DRR006524	Root Summer glycyrrhizin low producing strain	0.399
DRR006525	Leaf Summer glycyrrhizin high producing strain	6.560
DRR006526	Leaf Summer glycyrrhizin high producing strain	6.373

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	0.942
SRR2868004	Drought Stress (root)	0.892
SRR2967015	Control (root)	1.402

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	28.764
SRR9715740	Leaf	45.942
SRR9715741	Leaf	53.757
SRR9715739	Root	0.761
SRR9715742	Root	2.694
SRR9715743	Root	1.965

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.002
SRR8749028	MeJA induced 9h	0.110
SRR8749029	MeJA induced 9h	0.000
SRR8749030	Uninduced	0.209
SRR8749031	Uninduced	0.019
SRR8749032	Uninduced	0.071

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	0.961
SRR8400027	Control - Root	1.070