Gene detail information of Glyur000616s00026594 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G46495.1 | 4.00E-04 | RING/U-box superfamily protein |
| NR | XP_004498487.1 | 2.82E-89 | PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase B120-like isoform X1 [Cicer arietinum] |
| trEMBL | tr|A0A072VQH7|A0A072VQH7_MEDTR | 4.00E-85 | Wall-associated receptor kinase galacturonan-binding protein {ECO:0000313|EMBL:KEH40355.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00616 | 46267 | 47169 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000616s00026594.1 | PF13947.1 | GUB_WAK_bind | 39 | 113 | 1.30E-07 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.612 |
| SRR1783600 | control | 0.624 |
| SRR1783602 | moderate drought stress | 0.208 |
| SRR1811619 | moderate drought stress | 0.084 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.479 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.720 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.366 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.122 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.123 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 9.656 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 10.271 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 0.330 |
| SRR2868004 | Drought Stress (root) | 0.458 |
| SRR2967015 | Control (root) | 1.799 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 22.307 |
| SRR9715740 | Leaf | 3.154 |
| SRR9715741 | Leaf | 42.520 |
| SRR9715739 | Root | 0.000 |
| SRR9715742 | Root | 2.610 |
| SRR9715743 | Root | 2.745 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.000 |
| SRR8749028 | MeJA induced 9h | 0.000 |
| SRR8749029 | MeJA induced 9h | 0.000 |
| SRR8749030 | Uninduced | 0.000 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 0.642 |
| SRR8400027 | Control - Root | 0.876 |