Gene detail

Gene detail information of Glyur000615s00024016

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G17980.1	0	C2 calcium/lipid-binding plant phosphoribosyltransferase family protein
NR	XP_004489683.1	0	PREDICTED: uncharacterized protein LOC101501960 [Cicer arietinum]
COG	YP_007547453.1	3.00E-06	hypothetical protein WQG_3820 [Bibersteinia trehalosi USDA-ARS-USMARC-192]
Swissprot	tr\|Q9ZVT9\|C2GR1_ARATH	1.00E-07	C2 and GRAM domain-containing protein At1g03370
trEMBL	tr\|A0A072UIE1\|A0A072UIE1_MEDTR	0	Calcium-dependent lipid-binding (CaLB domain) family protein {ECO:0000313\|EMBL:KEH25590.1}

Sequence

Transcript Sequence

>Glyur000615s00024016.1
ATGGGAACGGTTCGAAAACTCATCGTGGAAGTCGTGGACGCTCACAACCTCGCTCCGAAAGACGGTCACGGCACATCCAGCCCCTACGTGGTAGTTGACTTCTACGGCCAGAGGAGGAAGACTCGAACCGCGGTTCGCGAACTGAACCCGGTCTGGAACGAAACGCTGTCGTTCAACGTTGACGCTCACAACAACAACGACAACAACATCTTCGGCGACGTTTTAGAACTCGACGTTTACCACGACCAGAAACACGGCCCTATCCGGCGCAACAACTCGCTGGGTCGAGTCCGACTCAGCTCGACTCAGTTCGTTCGAAAGGGCGAAGAGGCTCTGATATATTACGAGCTTAAGAAGAAGAGCTTGTTCAGCTTGGTTCAAGTACAAGGTAAAGTTGGCTTGAAAATCTACTACGCCGACGAGGAGGTTCCTCCGCCGCAACCTCCGCCGGAGAATCAAGCACCACCACCGAAACCGGAGGAAGCGAAGCCCGAACCTCAGTNCGAGCCTGAAAAAGTAGAAGGACAACCGGCGGTGCAACCATCTGAACCGCCACCGGAAGGTGAAAAGCCAAAAGAAGAGCCAAATGAGAAAGAGAAAACCGAACCTCCTGCACCACCCGAAGCTGAAAAGCCACCCGAGCCCGAGCCCGAGCCCGAGCCCGAGCCAGAGGCTGAACCAGAACCACAACCGCGAAACGAAGAAAGCGGGGATCGGGTGGATCCGTTACCACCAGAAGCACCTGTGATGGAAGCGGCTTCGGTTTTATCAAGGTCAAAATCGGAAATGAGATTCAGTGGTATCAACGGTCCACAGCCAATTCGAAGGGCAGCATCGACGGCTAGTTTTACATCAGAAGCATCNTCATTATCGCAAGAGAGCATGTTAATGGAACGGTCGTCGTTTGATCTAGTTGAGAAAATGCATTACCTCTTCGTTCACGTGGTGAAGGCGCGGTACTTGCCAACAAACGGTAACCCCGTTGTGAAGATCGCGGTTTCGGGTCACCACGTGTCGTCAAAACCCGCACGCAAAACTACGTTATTCGAATGGAACCAGACTTTCGCCTTCAGCCGCGACGCACCTGATTCCTCCCCAATACTTGAGATCACCGTGTGGGACCCATCGATTGGGGATGATGACGTGGACGGTCGTAGCTTGCTTGGTGGAGTATGCTTTGACGCGAACGAGATTCCCGTGAGGGACCCACCGGATAGCCCACTGGCCCCACAGTGGTATANAATGGAAGGTGGTGGGGCCCAGCATGGGGACCTCATGGTTGCCACGTGGATTGGAACCCAAGCCGACGAATCATTTTCCGACGCGTGGAAAAGCGACACACAAGGGCACGTGAATTCCCGAGCCAAGGTGTATCAGTCACCGAAGCTTTGGTACCTTCGAGCAACTGTTCTTGAAGCGCAAGACATAACAATGCCGTTCAGTTTAACGTCGTCGAAGGAAGCATGGTTTCAAGTCAAAGCCCAGCTTGGGTTCCAGGTGCTGAAATCAAAAATGGTTTCAACCCGAAACGGCACCGTTTCGTGGAACGAGGATCTTCTCTTTGTAGCAGCTGAGCCCGTTCACGATTACCTCGTGTTCACTTTGGAAAACCGGCAACACAAAGCGCCGGTGACAGTCGGTTCCTTAAGGATACCTCTCGCGGCAATTGAGAGGAGAGTTGATGACCGGAACGTCGCGTCGCGCTGGTTCACCTTTGAAGACGAAGAGAAGAGCGTTAGCAGCACCTACAAGGGGAGGGTTCACCTGCGGTTGTGCTTCGACGGAGGGTATCACGTGATGGACGAGGCAGCACACGTGTCCAGTGATTACCGCCCAACTGCGAGACAGCTCTGGAAGCCACCGGTTGGCACGGTCGAGCTCGGCATCATTGGTTGCAAGAATTTGATACCGATGAAGACGGTAAACGGTAAAACCACAACCGATGCTTACTGTGTCGCGAAGTACGGTAACAAATGGGTACGCACGAGAACCGTATCGGAGAATCTTGAACCCAAGTGGAACGAACAGTACACGTGGAAGGTTTTCGATCCTTGCACCGTTTTAACACTCGGAGTATTCGACAGTTATTCAGATTCAGACACCTCAACTGAATCCGTTACGCGACCCGATTTCCGTATAGGGAAAGTACGCGTACGTATATCTACGCTCCAAACGGGTCGTGTGTATAGAAATACGTATCCACTAGTTCTCCTCACGCATGCGGGTTTGAAAAAGATGGGNGAGCTTGAGATAGCAATAAGGTTTATTCGCACATCTCAACGGTTGGATTTCCTCCACGTGTACTCGCAACCTATGCTACCGTTGATGCACCATGTGAAACCGTTGGGGGTGATGCAACAAGAGGTGCTGCGGAACACCGCGGTGAAGATGGTGGCGGGGCACCTTTCTAGATCGGAACCGCCGCTGAGGAAAGAGGTTGTGTTTTACATGCTGGATGCTGATTCGCATAACTTCAGCGTGAGGAAGGTGCGTGCGAACTGGTACAGGATTGTGAATGTAGTTGCGGGGGTGATTGACATCGTGCGGTNGGTAGAGGATACACGTGGATGGAAGAATCCAACGGCCACGATTCTCGTACACGCGCTGGTTGTTGTGCTGGTGTGGTTCCCTGACTTGATCGTACCCACCCTGGCGTTTTATGTTTTTGCAATTGGCGCGTGGAACTATAGGTTTAGGTTGAGGGACCCACTCCCACANTTCGACCCGAAGATCTCGCTTGCTGACGTGGTGGACAGGGAGGAGCTGGATGAAGAGTTGGATGCGGTGCCGAGCACGCGATCCGGGGAGGTGGTGCGTGTGAGGTATGATAGGCTTCGCGCGCTCGGGGCGCGCGTGCAGACTGTNCTTGGGGATTTTGCAACGCAGGGGGAGCGCATGCAGGCGCTCGTGACGTGGCGGGATCCACGCGCGACTGGGATATTTGTTATGTTGTGTTTGGTTGTGGCGATGATAATGTATTTGGTTCCTTCGAAGATGGTGGCTATGGCTGGTGGGTTCTATTATCTTCGCCACCCTATCTTTCGCGACCGGTTGCCGTCGCCCGTGTTGAACTTCTTTAGAAGGCTACCTTCTCTGTCAGATCGAATTATGTAG

Protein Sequence

>Glyur000615s00024016.1
MGTVRKLIVEVVDAHNLAPKDGHGTSSPYVVVDFYGQRRKTRTAVRELNPVWNETLSFNVDAHNNNDNNIFGDVLELDVYHDQKHGPIRRNNSLGRVRLSSTQFVRKGEEALIYYELKKKSLFSLVQVQGKVGLKIYYADEEVPPPQPPPENQAPPPKPEEAKPEPQXEPEKVEGQPAVQPSEPPPEGEKPKEEPNEKEKTEPPAPPEAEKPPEPEPEPEPEPEAEPEPQPRNEESGDRVDPLPPEAPVMEAASVLSRSKSEMRFSGINGPQPIRRAASTASFTSEASSLSQESMLMERSSFDLVEKMHYLFVHVVKARYLPTNGNPVVKIAVSGHHVSSKPARKTTLFEWNQTFAFSRDAPDSSPILEITVWDPSIGDDDVDGRSLLGGVCFDANEIPVRDPPDSPLAPQWYXMEGGGAQHGDLMVATWIGTQADESFSDAWKSDTQGHVNSRAKVYQSPKLWYLRATVLEAQDITMPFSLTSSKEAWFQVKAQLGFQVLKSKMVSTRNGTVSWNEDLLFVAAEPVHDYLVFTLENRQHKAPVTVGSLRIPLAAIERRVDDRNVASRWFTFEDEEKSVSSTYKGRVHLRLCFDGGYHVMDEAAHVSSDYRPTARQLWKPPVGTVELGIIGCKNLIPMKTVNGKTTTDAYCVAKYGNKWVRTRTVSENLEPKWNEQYTWKVFDPCTVLTLGVFDSYSDSDTSTESVTRPDFRIGKVRVRISTLQTGRVYRNTYPLVLLTHAGLKKMGELEIAIRFIRTSQRLDFLHVYSQPMLPLMHHVKPLGVMQQEVLRNTAVKMVAGHLSRSEPPLRKEVVFYMLDADSHNFSVRKVRANWYRIVNVVAGVIDIVRXVEDTRGWKNPTATILVHALVVVLVWFPDLIVPTLAFYVFAIGAWNYRFRLRDPLPXFDPKISLADVVDREELDEELDAVPSTRSGEVVRVRYDRLRALGARVQTVLGDFATQGERMQALVTWRDPRATGIFVMLCLVVAMIMYLVPSKMVAMAGGFYYLRHPIFRDRLPSPVLNFFRRLPSLSDRIM

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00615	102444	105557	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0005515 protein binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000615s00024016.1	PF00168.25	C2	7	97	4.40E-18
Glyur000615s00024016.1	PF00168.25	C2	311	379	2.60E-06
Glyur000615s00024016.1	PF00168.25	C2	467	540	17
Glyur000615s00024016.1	PF00168.25	C2	626	700	1.80E-14
Glyur000615s00024016.1	PF11696.3	DUF3292	819	888	7.50E-06
Glyur000615s00024016.1	PF08372.5	PRT_C	881	1037	9.90E-67

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	42.895
SRR1783600	control	43.070
SRR1783602	moderate drought stress	18.807
SRR1811619	moderate drought stress	19.049

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	11.986
DRR006520	Root Summer glycyrrhizin high producing strain	11.883
DRR006521	Root Winter glycyrrhizin high producing strain	0.072
DRR006522	Root Winter glycyrrhizin high producing strain	0.070
DRR006523	Root Summer glycyrrhizin low producing strain	4.503
DRR006524	Root Summer glycyrrhizin low producing strain	4.862
DRR006525	Leaf Summer glycyrrhizin high producing strain	6.216
DRR006526	Leaf Summer glycyrrhizin high producing strain	6.177

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	24.971
SRR2868004	Drought Stress (root)	17.348
SRR2967015	Control (root)	16.525

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	6.158
SRR9715740	Leaf	4.227
SRR9715741	Leaf	5.427
SRR9715739	Root	42.355
SRR9715742	Root	21.140
SRR9715743	Root	26.440

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	3.737
SRR8749028	MeJA induced 9h	2.004
SRR8749029	MeJA induced 9h	1.049
SRR8749030	Uninduced	0.119
SRR8749031	Uninduced	0.025
SRR8749032	Uninduced	0.018

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	18.355
SRR8400027	Control - Root	20.854