Gene detail information of Glyur000615s00024015.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G71695.1 | 5.00E-52 | Peroxidase superfamily protein |
| NR | AFK48200.1 | 5.33E-106 | unknown [Lotus japonicus] |
| Swissprot | tr|Q96520|PER12_ARATH | 3.00E-64 | Peroxidase 12 (Precursor) |
| trEMBL | tr|I3T6Q8|I3T6Q8_LOTJA | 2.00E-106 | Uncharacterized protein {ECO:0000313|EMBL:AFK48200.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00615 | 94066 | 101013 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| K00430 | E1.11.1.7 | EC:1.11.1.7 | Phenylpropanoid biosynthesis | map00940 |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000615s00024015.1 | PF00141.18 | peroxidase | 51 | 197 | 6.00E-38 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 18.536 |
| SRR1783600 | control | 18.791 |
| SRR1783602 | moderate drought stress | 6.573 |
| SRR1811619 | moderate drought stress | 6.847 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 24.436 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 21.498 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.935 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.438 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.000 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 0.500 |
| SRR2868004 | Drought Stress (root) | 0.292 |
| SRR2967015 | Control (root) | 0.564 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 0.061 |
| SRR9715740 | Leaf | 0.000 |
| SRR9715741 | Leaf | 0.000 |
| SRR9715739 | Root | 14.783 |
| SRR9715742 | Root | 32.418 |
| SRR9715743 | Root | 25.836 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.000 |
| SRR8749028 | MeJA induced 9h | 0.000 |
| SRR8749029 | MeJA induced 9h | 0.000 |
| SRR8749030 | Uninduced | 0.000 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 2.626 |
| SRR8400027 | Control - Root | 2.794 |