Gene detail

Gene detail information of Glyur000615s00024012

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G20950.2	0	Glycosyl hydrolase family protein
NR	KHN20835.1	0	Lysosomal beta glucosidase [Glycine soja]
COG	YP_003265703.1	0	glycoside hydrolase [Haliangium ochraceum DSM 14365]
Swissprot	tr\|A5JTQ3\|XYL2_MEDSV	1.00E-33	Alpha-L-arabinofuranosidase (Precursor)
trEMBL	tr\|I1MW70\|I1MW70_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA17G24410.1}

Sequence

Transcript Sequence

>Glyur000615s00024012.1
ATGTGATTGATTGTATCTGTATTTGCAACAGTAACCTGAATATCTTGTTCTGATCTCATTGTGAAGTTGTGTTTTTGNGGTGAAGAAATGGNCAAAGCTTCCATCTTTTTGGTGGGNCTTGTGCTCTTGCACTGTTGGGTANCCATGGCAGANGCAGANTACTTGAAATANAAAGATCCAAAACAGCCACTGAACACTCGAATCAAGGATCTTATCAACAGGATGACTGTGGAGGAGAAAATTGGCCAGATGGTNCAGATTGATCGAAGTGTTGCTTCTGCTGATGTGATTAAGAAGTATTTTATTGGGAGTGTGCTAAGTGGTGGTGGCAGTGTTCCTAAGGAGAAGGCTTCTGCAGAGGATTGGGTGGACATGGTGAATGATTTTCAAAAGGGTGCTTTATCAACTAGNTTGGGAATTCCAATGATATATGGAATTGATGCTGTTCATGGCCATAACAATGTCTATAAGGCAACAATTTTTCCTCACAATGTTGGACTTGGAGCTACAAGGGACCCTCANCTAGTGAAGAAGATTGGAGATGCAACTGCTCTTGAAGTCAGAGCAACTGGAATTCAATATGTCTTTGCTCCTTGCATAGCTGTATGTAGAGATCCAAGGTGGGGTAGATGTTATGAAAGTTATAGTGAANATCATAAAGTAGTTCAAGCTATGACTGAGATCATTCCAGGCCTCCAAGGTGACCTCCCTGCAAACTCAAGAAAGGGTGTCCCATTTGTTGCTGGAAAAAAGAAAGTTGCAGCTTGTGCTAAGCACTATGTTGGTGATGGTGGAACCACAAAAGGAATCAATGAGAACAACACAGTGATAAACAGACATGGATTGCTCAGCATTCACATGCCAGCCTACTATAACTCCATCATTAAGGGTGTGGCAACCATCATGGTCTCTTACTCAAGCTGGAATGGAGAAAAGATGCATGCTAATCAGGAGTTAATCACTGGTTTTCTTAAGAACACACTCCGTTTCCGGGGTTTTGTCATATCAGATTGGGAGGGAATTGATAGGATAACTTCTCCTCCTCATGCTAACTACACATACTCCATTCAAGCCGGAGTCAACGCTGGTATTGACATGATAATGGTTCCCTATAACTACACAGAATTCATTGATGGCCTAACTGTGATGGTGAAGAATAATGTCATACCCATGAGNCGAATCGATGATGCTGTGAAGAGGATTTTGAGAGTCAAGTTTGAGCATAGAGAATTGGCTAGGGAAGCTGTGAGGAAATCATTGGTCCTATTAAAGAATGGCGAAAATGCTGATGAGCCATTGCTCCCTCTTCCTAAGAAGGCTTCAAAAATACTTGTTGCTGGAACTCATGCTGATAATCTAGGCTATCAATGTGGTGGATGGACCATTGAATGGCAAGGACTTAGTGGCAACAACATTACNAGTGACACCAAGGTAATCTACAAGGAGAACCCTTCCTACAGCTATGTCAAAGCCAATGGCTTTGATTATGCCATTGTGGTACTTGGAGAGAAACCATATGCAGAAACATTTGGTGATAGCATGAACCTGACGATCTCGGATCCCGGGCCGGATACCATCAACAATGTCTGTGGAGTTGTCAAGTGTGTTGTTGTCCTCATAAGTGGTAGACCTGTGGTTATACAACCATACCTTGACATGATTGAGTCCCTTGTAGCTGCTTGGCTTCCTGGTACTGAGGGTCAAGGTGTAACTGATGTCTTGTTTGGTGACTATGGATTCAGTGGTAAGCTTCCAAGGACATGGTTCAAGACTGTTGAGCAGTTGCCAATGAATGTTGGAGATCCTCATTATGACCCTCTTTTCCCATTTGGATTTGGCCTTACAACAAAACCACACAAGGCTACT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00615	63481	68809	-

Gene family

Gene family	subfamily
Carbohydrate-Active enzymes Family	GH3

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K05349	bglX	EC:3.2.1.21	Starch and sucrose metabolism	map00500
			Cyanoamino acid metabolism	map00460
			Phenylpropanoid biosynthesis	map00940

Gene Ontology

biological_process
GO:0005975 carbohydrate metabolic process

molecular_function
GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000615s00024012.1	PF00933.16	Glyco_hydro_3	47	375	2.50E-85
Glyur000615s00024012.1	PF01915.17	Glyco_hydro_3_C	391	587	2.70E-40

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	9.028
SRR1783600	control	8.879
SRR1783602	moderate drought stress	4.327
SRR1811619	moderate drought stress	4.367

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	18.966
DRR006520	Root Summer glycyrrhizin high producing strain	18.994
DRR006521	Root Winter glycyrrhizin high producing strain	1.345
DRR006522	Root Winter glycyrrhizin high producing strain	1.058
DRR006523	Root Summer glycyrrhizin low producing strain	23.377
DRR006524	Root Summer glycyrrhizin low producing strain	23.335
DRR006525	Leaf Summer glycyrrhizin high producing strain	27.861
DRR006526	Leaf Summer glycyrrhizin high producing strain	29.041

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	71.500
SRR2868004	Drought Stress (root)	43.586
SRR2967015	Control (root)	50.482

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	46.951
SRR9715740	Leaf	9.698
SRR9715741	Leaf	33.982
SRR9715739	Root	14.429
SRR9715742	Root	32.510
SRR9715743	Root	29.913

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	35.588
SRR8749028	MeJA induced 9h	40.747
SRR8749029	MeJA induced 9h	41.440
SRR8749030	Uninduced	61.172
SRR8749031	Uninduced	26.397
SRR8749032	Uninduced	18.896

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	30.889
SRR8400027	Control - Root	35.506