Gene detail

Gene detail information of Glyur000615s00024007

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G03800.1	1.00E-107	syntaxin of plants 131
NR	XP_004489690.1	1.09E-180	PREDICTED: syntaxin-132-like [Cicer arietinum]
Swissprot	tr\|Q9SRV7\|SY131_ARATH	8.00E-147	Putative syntaxin-131
trEMBL	tr\|I3T5G8\|I3T5G8_MEDTR	2.00E-180	Uncharacterized protein {ECO:0000313\|EMBL:AFK47760.1}

Sequence

Transcript Sequence

>Glyur000615s00024007.1
CTTTCTCTCTCTCTGGGGAGTGGAACTCTGGCCTGGTTTCTGGTTAACCAGGTCCTTAACCAGCTCCGTCCTTAACCAGCTCCATCTCCATTTTTCTTCTTCCTCTCGCAATCACATTCTCTGTTTCCTTTGAAATTCTAAGCCTTATTTTCTTCCACAATGAACGATCTTCTAACGGAATCGTTTGAGATCCCACGTCGCCAAGGTAACAGAGGTGGTGATGTTGAGTTAGGAGAATATGCAAGGAATTCAGGAGAGCTGGGCTTGGATAGTTTCTTCAAAAAGGTTCAGGAGCTNGAGAAACATTATGCTAAGCTGGATAAGCTTTTGAGGAAGCTCCAGGAGGNCCATGAGGAGTCCAAAGCTGTGACCAAAGCTCCTGCCATGAAGGATATAAAGCAGAGAATGGAGAAAGATGTTGATGAAGTTAAGAAAACTGCACATTACATAAAGACCAAAGTTGAAGAGGTGGACAAAGAGAATTTGGCAAATAGGCAGAAGCCAGGATGCGGAAAAGGATCAGCTGTTGACCGTTCCTTGAAAAAGAAACTGAAGGACAAGATGGCTGAATTTCAGACCCTGAGAGGAGNCATCCATCAAGAATATCGCGAGGTTGTTGAGAGACGCGTCTTTACAGTAACGGGAGCAAGAGCTGANGAGGAGACAATTGACAGATTAATTGAGACTGGAGACAGTGAACAAATTTTCCAGAAGGCAATTCAAGAACAAGGAAGAGGCCAGATAATGGACACCCTAGCAGAAATTCAAGAGCGACATGAAGCAGTGAGAGATGTTGAGAGGAAGCTTCTTGATTTACAACAGATATTTATGGATATTGCGGTGTTAGTCGATGCACAAGGAGACATGCTCGACAACATAGAATCACAGGTTTCAAGTGCAGTTGATCATGTGCAGCAAGGCAATAATGCTCTCCAGAAGGCAAAGAAGCTACAAAGAAACTCAAGAAAATGGATGTGCATTGCAATCATGATACTTCTCATTATCGTTATAATCATCGTCGTTGCTGTCATCAAACCATGGGTTAGCAAAAAGGGTGCTTAGTTACTAATTGTTAATGCATAATCACGTAACATTTGCATATTGATGTTCTTTTTCCTAATCCATTCTTTTCGGGTTGTATTGCACTTGAAAGAAACATTGGACCAAATATTTGGATTTAAAGCAAAGGGTGTACTTTAGAGAGGATGAATTGATTCATGAATTGACTTCACAGTCCATTATACCTGTGCATATGATTATCATATT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00615	42766	50997	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process

GO:0006886 intracellular protein transport

GO:0016192 vesicle-mediated transport

cellular_component
GO:0016020 membrane

molecular_function

GO:0005484 SNAP receptor activity

GO:0005515 protein binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000615s00024007.1	PF00804.20	Syntaxin	36	140	3.60E-14
Glyur000615s00024007.1	PF05739.14	SNARE	204	266	3.40E-19

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	9.546
SRR1783600	control	9.791
SRR1783602	moderate drought stress	2.779
SRR1811619	moderate drought stress	2.904

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	14.960
DRR006520	Root Summer glycyrrhizin high producing strain	14.532
DRR006521	Root Winter glycyrrhizin high producing strain	0.939
DRR006522	Root Winter glycyrrhizin high producing strain	0.977
DRR006523	Root Summer glycyrrhizin low producing strain	5.355
DRR006524	Root Summer glycyrrhizin low producing strain	5.319
DRR006525	Leaf Summer glycyrrhizin high producing strain	5.600
DRR006526	Leaf Summer glycyrrhizin high producing strain	5.590

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	45.941
SRR2868004	Drought Stress (root)	20.960
SRR2967015	Control (root)	24.146

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	6.365
SRR9715740	Leaf	2.479
SRR9715741	Leaf	2.930
SRR9715739	Root	1.054
SRR9715742	Root	2.834
SRR9715743	Root	3.211

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	34.164
SRR8749028	MeJA induced 9h	36.808
SRR8749029	MeJA induced 9h	40.490
SRR8749030	Uninduced	12.956
SRR8749031	Uninduced	6.116
SRR8749032	Uninduced	8.492

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	25.517
SRR8400027	Control - Root	19.959