Gene detail

Gene detail information of Glyur000615s00024001

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G18110.1	6.00E-97	novel cap-binding protein
NR	XP_006574760.1	5.42E-154	PREDICTED: eukaryotic translation initiation factor NCBP-like isoform X2 [Glycine max]
Swissprot	tr\|A3RCV9\|IF4E3_WHEAT	4.00E-123	Eukaryotic translation initiation factor NCBP
trEMBL	tr\|I1JD60\|I1JD60_SOYBN	2.00E-154	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA02G08010.1}

Sequence

Transcript Sequence

>Glyur000615s00024001.1
GCTACATATAGCAAAATTACCCATCGCGTTCAATCCCTCTCTCTGGTCTGAACCTCAACACTGAACGCGTAAACGAAAAAAGGGGATTAGGGTTTAAGGAAGCGCTAATGGATTTGACAGCGGAGAAGAAGGAATCAGAGAAGAAGAAGGAATCAGAGAACAACAACAACAACAACAACAACAACAACATCAATAACCCCGAAAGCGCACACCAACTCGTAGATTCCTCTTCTCCTGACTCCAACAACAAAGAAATCGAAGAGCGACAAGCACGTGAACTCAAAGCTGGTCTTCACCCTCTTAAGCAGCACAAATTTGTGTTTTGGTACACGCGCCGAACACCTGGAGTTCGAAATCAAACATCGTACGAGGACAACATAAAGAAAATCGTTGATTTCAGTACGGTTGAAGGATTTTGGATCTGCTATTGCCATCTTGCTCGTCCTTCTTCTTTGCCTAGTCCAACTGATTTGCACCTTTTTAAAGAAGGAATTCGTCCTTTATGGGAGGACTCTGCTAACTGCAATGGTGGTAAATGGATTATACGCTTCAAAAAGGTTGTCTCAGGTCGTTTTTGGGAGGATCTGGTTCTTGCATTAGTGGGTGACCAATTGGATTATGGGGATAACATATGTGGTGCAGTACTAAGCATTCGTTTCAACGAGGATATATTGAGTGTCTGGAATCGCAATGCATCTGATCATCAGGCTGTAATGGCTTTGAGAGATTCGATTAAGCGTCACTTAAAGCTTCCTCACAGCTATGTTATGGAGTACAAGCCTCATGATGCTTCTCTGCGAGACAATTCATCTTACAGGAATACTTGGTTGAGAGGCTAGATATATCACAACTGTGTTCTTTGTCAAAGTCCCCTCTGCTGAAGCTATATTGTATACTGGCACAACTTTCACATACTCTGCCTTTTTAATCATTGGACACAGTCTAATGATGGTGTTGGGGTGTTCCAAGGCTGGTTTTGCCTTTTAAGTTCAATTTACAACAGCAACATTGTGACTGCTTTATGTAGTTTTCATTTGGGTACCTTGAGGATTCACTCTCTAATTTGTGTATTGTCTCACTCCTGTTGTTGTTGTTGTAAATAAAGTTAACTCCTCTTGCTTTTCACCTCGCTGAAGGAGAGAAGCATGACTTTTTTTTACTCCANATGATAGATTACTCTTGTAGCGCATTTTGACATAAAAGCATTAATCCTTGAATATGGAGAAGTGTTATAAGGGG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00615	22034	25353	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006413 translational initiation

cellular_component
GO:0005737 cytoplasm

molecular_function

GO:0003723 RNA binding

GO:0003743 translation initiation factor activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000615s00024001.1	PF01652.13	IF4E	67	226	1.20E-53

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	460.978
SRR1783600	control	465.773
SRR1783602	moderate drought stress	781.222
SRR1811619	moderate drought stress	789.957

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	633.215
DRR006520	Root Summer glycyrrhizin high producing strain	633.986
DRR006521	Root Winter glycyrrhizin high producing strain	797.106
DRR006522	Root Winter glycyrrhizin high producing strain	778.266
DRR006523	Root Summer glycyrrhizin low producing strain	970.833
DRR006524	Root Summer glycyrrhizin low producing strain	983.478
DRR006525	Leaf Summer glycyrrhizin high producing strain	56.898
DRR006526	Leaf Summer glycyrrhizin high producing strain	56.268

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	260.257
SRR2868004	Drought Stress (root)	316.303
SRR2967015	Control (root)	397.335

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	80.712
SRR9715740	Leaf	116.324
SRR9715741	Leaf	169.353
SRR9715739	Root	518.393
SRR9715742	Root	608.948
SRR9715743	Root	607.148

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	151.570
SRR8749028	MeJA induced 9h	118.010
SRR8749029	MeJA induced 9h	116.515
SRR8749030	Uninduced	98.824
SRR8749031	Uninduced	100.360
SRR8749032	Uninduced	159.678

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	256.939
SRR8400027	Control - Root	275.607