Gene detail

Gene detail information of Glyur000614s00017207.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G63810.1	0	beta-galactosidase 10
NR	KHN09646.1	0	Beta-galactosidase 3 [Glycine soja]
COG	YP_003380010.1	2.00E-35	beta-galactosidase [Kribbella flavida DSM 17836]
Swissprot	tr\|Q9FN08\|BGA10_ARATH	0	Beta-galactosidase 10 (Precursor)
trEMBL	tr\|V7AYS1\|V7AYS1_PHAVU	0	Beta-galactosidase {ECO:0000256\|RuleBase:RU000675}

Sequence

Transcript Sequence

>Glyur000614s00017207.1
ATGGAAAAATGGGTGGCTTTGGTGATGCTGTTGGTGTCGTTGAAAACAATATTGGAAGGTTTTGGCGTTAAAGCAGATGATGATCAGGTGACATACGATGGAAGATCTCTCATCATTGATGGGCAGAGAAAAATTCTCTTATCGGGTTCAATTCATTACCCCCGCAGCACTCCTCAGATGTGGCCGGATTTGATAGCGAAAGCAAAACAAGGAGGATTGGACGTCATTCAGACTTACGTGTTTTGGAATCTACATGAGCCCCAACCTGGCAAGTATGATTTCAGCGGCAGATATGACTTGGTGAGATTCATAAAGGAAATCCAAGCTCAAGGGCTGTACGTTTGCCTTAGGATTGGACCTTTCATCGAAAGTGAATGGACATACGGGGGATTCCCATTTTGGTTACATGATGTCCCTGCCATTGTCTACCGAACGGACAATGAGCCATTCAAGATTGAGAATGAATATCAAAACGTCCAAAAGGCATTTGCCACTGCAGGATCGCAGTATGTCCAATGGGCCGCAAAGATGGCAGTGGGCCTTCAGACCGGCGTACCATGGATCATGTGCAAGCAAACTGATGCTCCTGATCCTGTGATCAATACATGCAATGGCATGAGATGTGGAGAAACTTTTACTGGCCCAAACTCCCCCAATAAGCCTGCCATGTGGACTGAGAACTGGACATCTTTCTATCAAGTGTATGGTGGATTGCCATACATAAGGTCTGCTGAAGACATTGCATTTCATGTCACTCTTTTTATTGCAAGAAACGGAAGCTATGTCAACTATTATATGTACCATGGTGGAACTAACTTTGGGAGAACGGCCTCTGCTTATACTATAACAGCCTATTATGATCAAGCCCCACTTGATGAATATGGTTTGTTCAGGCAACCCAAGTGGGGGCATTTAAAGGAGTTGCATGCTGCAATCAAGTCTTGCTCTGACACTTTACTACAAGGAGTGCAGAGGAACTTTTCTTTAGGCCAACTGCAGGAGGGTTATGTCTTTGAAGAAGAAAATGGAGAATGTGTTGCATTCCTTATAAACAATGATAGAGGGAATAAGATTACTGTCCAATTCCAAAACAGATCATATGAATTGCTCCCCAAGTCAATAAGTATCTTACCAGATTGTCAAAATGTGACTTTCAATACTGCAAATGTAAATACAACAAGCAACAAAAGGATCATAACTCCAAGGCAAAACTTCAGCTCAGTGGATAATTGGGAACAATTCCAAGATGTCATTCCAAACTTTGATGACACCTCCCTAAGATCAAACTCATTACTTGAGCAAATGAATACAACCAAAGACAATTCCGATTACCTTTGGTATACGCTTAGGTTTGAATACAATTTATCTTGCAACGAACCAACACTTCGTGTTCAATCTGCTGCTCATGTTGCCCATGCTTTTGTGAACAACACATACATTGGAGCGGTACATGGAAATCATGATGTGAAGTCATTCACCTTAGAGCTCCCCGTTACATTAAACGAAGGGACTAACAACCTTTCTATACTCAGTGTTATGGTTGGACTTCCAGATTCAGGGGCATTTCTTGAAAGAAGATTTGCTGGTTTAATCAGCGTGGAACTTCAGTGCAGCGAAGAAGAGTCTCTCAATTTGTCCAACTCTACATGGGGATATCAGGTTGGATTACTGGGNGAGCAATTAGAAGTATATAAAGAACAAAATAGCAGTGATATTGAGTGGACTCAACTGGGGGATAGTATGAATCAGGCTCTCACATGGTACAAGACTACATTTGACACACCCAAGGGAGATGACCCTGTTGCCTTGGACCTTAGCTCAATGGGAAAAGGCGAAGCTTGGGTAAATGGACAAAGCATTGGTCGCTATTGGGTTTTGTTTCATGATTCCAAAGGCATGCCTTCACAATCACTGTATCATGTTCCTCGGTCTTTCCTTAAAGACAATGGAAACATTTTGGTTTTGGTGGAGGAAGGTGGTGGGAACCCTCTTGACATCTCCTTGAATACTCTTCTGCTTCTACTATTAAAACCCCACCAAGAAGAAGAAGACACCACCGTAGCTTCGTTGGCCTTCGCCGGTAACGTCACCTACGATGGTCGCTCGCTCATCATTGACGGCCACCGCAAGCTTCTTATCTCTACCTCCATTCATTACCCGAGAAGCGTTCCTGCGATGTGGCCTGGTCTTGTTCAAACAGCGAAGGAAGGTGGGGCAGATGTGATCGAAACCTATGTTTTTTGGAATGGCCATGAGCTTTCTCCGGGCAATTATTACTTTGGAGGACGGTTCGATCTGGTCAAGTTTGCGAAGATTGTTCAGGAGGCTGGGATGTACTTGATTCTTCGGATAGGCCCATTTGTTGCTGCAGAATGGAATTTTGGTGGTGTACCAGTATGGCTGCATTATATTCCAGGCACTGTATTCCGGACTTACAATCAGCCTTTTATGATAGAAAATGAATATGGATACTATGAAAACTTTTATAAAGAGGATGGTAAGAAATATGCCATGTGGGCTGCAAAAATGGCTGTTTCTCAAAATACAGGTGTCCCGTGGATAATGTGCCAACAGTGGGATGCTCCAGATCCTGTGATNGATACTTGTAACTCATTCTACTGTGATCAATTTACACCTACTTCTCCAAATAGGCCCAAAATTTGGACTGAGAACTGGCCTGGATGGTTTAAAACTTTTGGGGGCAGAGATCCTCACAGGCCAGCAGAAGATGTTGCTTATTCTGTTGCTCGTTTCTTCCAGAAAGGTGGAAGTGTGCATAATTACTACATGTATCATGGGGGAACAAATTTTGGGCGTACAGCAGGTGGTCCATTCATTACTACAAGTTATGACTATGATGCCCCGATAGATGAGTATGGGTTACCTAGACTTCCAAAATGGGGACATCTTAAGGATCTTCACAAAGCTATCAAGTTATGTGAGCATATTTTGCTTAATGGTAAATCGGCTGATATCTATACTGACTCATCTGGATCATGTGCTGCCTTCATTGCTAATGTTGATGATAAAAATGATAAGGCAGTGAAATTTCGCAATGCATCATATNACCTGCCAGCATGGTCAGTTAGCATTCTTCCTGATTGCAAGAATGTGGTGTTCAACACAGCAAAGGTTACTTCCCAGACAAACATAGTTGCAATGATTCCAGAGAATTTGCAGCAATCAGATAAAGGTCTAAAAACTTTCAAATGGGATGTATTGAAGGAGAAACCAGGGATTTGGGGGAAGGCTGACTTTGTTAAAAATGGCTTTGTCGACAACATTAATACCACCAAAGATACCACTGACTACCTGTGGCTTACAACAAGTATAAGTGTTGGTGAAAATGAAGAATTCCTAAAGAATGGAAGCAATCCAGTACTTATAATAGAATCCAAGGGTCATGCTCTCCATGCTTTTGTGAATCAGGAATATCAAGGTACTGCATCTGGAAATGGTACGCATTCACCATTCACTTTTAAGAATCCCATCCCTCTCAGGGCAGGGAAGAATGAAATTGCTTTATTGACATTGACTGTTGGCTTACAGACCGCTGGACCATTTTATGACTTCATTGGGGCAGGACTAACAAGTGTAAAGATTAAGGGACTCAACAATAAGACAATAGACTTGTCTTCTAATGCCTGGACTTACAAGATTGGAGTACAAGGAGAACATCTAAAGATATACCAGCAAGACAGATTGAATAGTGTGAACTGGACATCTACTTCAGAACCGCCGAAAGGGCAGGCATTGACATGGTACAAGGCTATTGTGGATGCTCCACCNGGGGATGAACCGGTTGGATTGGATATGTTGCATATGGGTAAAGGTCTAGCCTGGTTAAATGGTGAAGAAATCGGAAGATATTGGCCTAGGATTAGTGAGTTCAAGAAAGAAGATTGTGTTCAAGAATGTGACTACAGAGGCAAATTCAATCCTGACAAATGTGACACTGGNTGTGGAGAACCTACACAGAAATGGTATCATGTTCCGCGATCTTGGTTCAAGCCATCTGGAAATGTTCTTGTCATCTTTGAGGAGAAAGGTGGAGACCCATCACAGATTAAGTTCCTGAGACGTAAAGTATCTGGAGTGTGTGCCTTTGTTGCTGAGGACTACCCCTCTGTTGGGCTCCTTTCTCCAGGGTGAAGAAGACAAGACAGAGAACAAAAAAAAAACCGTTCCTTTTGCCCGTTTAACGTGCCCCAGTGACACACTCATATCTGCTGTGAAATTTGCTAGCTTTGAACCCCTTCTGGGAAATGTGGGTCATACCTAAAGGGAGATTGCC

Protein Sequence

>Glyur000614s00017207.1
MEKWVALVMLLVSLKTILEGFGVKADDDQVTYDGRSLIIDGQRKILLSGSIHYPRSTPQMWPDLIAKAKQGGLDVIQTYVFWNLHEPQPGKYDFSGRYDLVRFIKEIQAQGLYVCLRIGPFIESEWTYGGFPFWLHDVPAIVYRTDNEPFKIENEYQNVQKAFATAGSQYVQWAAKMAVGLQTGVPWIMCKQTDAPDPVINTCNGMRCGETFTGPNSPNKPAMWTENWTSFYQVYGGLPYIRSAEDIAFHVTLFIARNGSYVNYYMYHGGTNFGRTASAYTITAYYDQAPLDEYGLFRQPKWGHLKELHAAIKSCSDTLLQGVQRNFSLGQLQEGYVFEEENGECVAFLINNDRGNKITVQFQNRSYELLPKSISILPDCQNVTFNTANVNTTSNKRIITPRQNFSSVDNWEQFQDVIPNFDDTSLRSNSLLEQMNTTKDNSDYLWYTLRFEYNLSCNEPTLRVQSAAHVAHAFVNNTYIGAVHGNHDVKSFTLELPVTLNEGTNNLSILSVMVGLPDSGAFLERRFAGLISVELQCSEEESLNLSNSTWGYQVGLLGEQLEVYKEQNSSDIEWTQLGDSMNQALTWYKTTFDTPKGDDPVALDLSSMGKGEAWVNGQSIGRYWVLFHDSKGMPSQSLYHVPRSFLKDNGNILVLVEEGGGNPLDISLNTLLLLLLKPHQEEEDTTVASLAFAGNVTYDGRSLIIDGHRKLLISTSIHYPRSVPAMWPGLVQTAKEGGADVIETYVFWNGHELSPGNYYFGGRFDLVKFAKIVQEAGMYLILRIGPFVAAEWNFGGVPVWLHYIPGTVFRTYNQPFMIENEYGYYENFYKEDGKKYAMWAAKMAVSQNTGVPWIMCQQWDAPDPVXDTCNSFYCDQFTPTSPNRPKIWTENWPGWFKTFGGRDPHRPAEDVAYSVARFFQKGGSVHNYYMYHGGTNFGRTAGGPFITTSYDYDAPIDEYGLPRLPKWGHLKDLHKAIKLCEHILLNGKSADIYTDSSGSCAAFIANVDDKNDKAVKFRNASYXLPAWSVSILPDCKNVVFNTAKVTSQTNIVAMIPENLQQSDKGLKTFKWDVLKEKPGIWGKADFVKNGFVDNINTTKDTTDYLWLTTSISVGENEEFLKNGSNPVLIIESKGHALHAFVNQEYQGTASGNGTHSPFTFKNPIPLRAGKNEIALLTLTVGLQTAGPFYDFIGAGLTSVKIKGLNNKTIDLSSNAWTYKIGVQGEHLKIYQQDRLNSVNWTSTSEPPKGQALTWYKAIVDAPPGDEPVGLDMLHMGKGLAWLNGEEIGRYWPRISEFKKEDCVQECDYRGKFNPDKCDTGCGEPTQKWYHVPRSWFKPSGNVLVIFEEKGGDPSQIKFLRRKVSGVCAFVAEDYPSVGLLSPG

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00614	112541	135562	-

Gene family

Gene family	subfamily
Carbohydrate-Active enzymes Family	GH35

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K01893	NARS, asnS	EC:6.1.1.22	Aminoacyl-tRNA biosynthesis	map00970

Gene Ontology

biological_process
GO:0005975 carbohydrate metabolic process

molecular_function
GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000614s00017207.1	PF01301.14	Glyco_hydro_35	36	151	2.60E-53
Glyur000614s00017207.1	PF13364.1	BetaGal_dom4_5	419	514	6.60E-08
Glyur000614s00017207.1	PF01301.14	Glyco_hydro_35	702	817	4.80E-46
Glyur000614s00017207.1	PF01301.14	Glyco_hydro_35	818	976	3.90E-46

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	7.372
SRR1783600	control	7.458
SRR1783602	moderate drought stress	4.469
SRR1811619	moderate drought stress	4.413

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	7.875
DRR006520	Root Summer glycyrrhizin high producing strain	8.185
DRR006521	Root Winter glycyrrhizin high producing strain	8.979
DRR006522	Root Winter glycyrrhizin high producing strain	8.796
DRR006523	Root Summer glycyrrhizin low producing strain	6.196
DRR006524	Root Summer glycyrrhizin low producing strain	6.481
DRR006525	Leaf Summer glycyrrhizin high producing strain	8.644
DRR006526	Leaf Summer glycyrrhizin high producing strain	8.440

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	16.295
SRR2868004	Drought Stress (root)	12.602
SRR2967015	Control (root)	13.985

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	8.361
SRR9715740	Leaf	6.538
SRR9715741	Leaf	7.424
SRR9715739	Root	2.852
SRR9715742	Root	10.274
SRR9715743	Root	8.513

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	11.471
SRR8749028	MeJA induced 9h	13.077
SRR8749029	MeJA induced 9h	8.734
SRR8749030	Uninduced	5.357
SRR8749031	Uninduced	4.701
SRR8749032	Uninduced	4.933

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	17.094
SRR8400027	Control - Root	19.428