Gene detail information of Glyur000614s00017197 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G63860.1 | 0 | Regulator of chromosome condensation (RCC1) family protein |
| NR | XP_003602664.1 | 0 | RCC1 and BTB domain-containing protein [Medicago truncatula] |
| COG | YP_743517.1 | 5.00E-55 | regulator of chromosome condensation, RCC1 [Alkalilimnicola ehrlichii MLHE-1] |
| Swissprot | tr|Q9FN03|UVR8_ARATH | 0 | Ultraviolet-B receptor UVR8 |
| trEMBL | tr|G8A1N5|G8A1N5_MEDTR | 0 | RCC1 and BTB domain-containing protein {ECO:0000313|EMBL:AES85373.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00614 | 51729 | 58182 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000614s00017197.1 | PF00415.13 | RCC1 | 41 | 86 | 7.00E-13 |
| Glyur000614s00017197.1 | PF00415.13 | RCC1 | 93 | 140 | 1.40E-16 |
| Glyur000614s00017197.1 | PF00415.13 | RCC1 | 143 | 192 | 3.60E-17 |
| Glyur000614s00017197.1 | PF00415.13 | RCC1 | 195 | 242 | 6.20E-13 |
| Glyur000614s00017197.1 | PF00415.13 | RCC1 | 247 | 296 | 4.00E-13 |
| Glyur000614s00017197.1 | PF00415.13 | RCC1 | 300 | 348 | 3.90E-16 |
| Glyur000614s00017197.1 | PF00415.13 | RCC1 | 353 | 384 | 8.00E-09 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 56.692 |
| SRR1783600 | control | 57.119 |
| SRR1783602 | moderate drought stress | 48.175 |
| SRR1811619 | moderate drought stress | 47.894 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 62.106 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 61.017 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 26.212 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 25.364 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 49.118 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 48.701 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 28.962 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 28.661 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 71.414 |
| SRR2868004 | Drought Stress (root) | 71.340 |
| SRR2967015 | Control (root) | 74.942 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 42.145 |
| SRR9715740 | Leaf | 42.297 |
| SRR9715741 | Leaf | 42.143 |
| SRR9715739 | Root | 26.873 |
| SRR9715742 | Root | 52.484 |
| SRR9715743 | Root | 47.959 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 33.354 |
| SRR8749028 | MeJA induced 9h | 30.327 |
| SRR8749029 | MeJA induced 9h | 25.350 |
| SRR8749030 | Uninduced | 14.770 |
| SRR8749031 | Uninduced | 9.530 |
| SRR8749032 | Uninduced | 13.675 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 109.497 |
| SRR8400027 | Control - Root | 129.295 |