Gene detail information of Glyur000614s00017194 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G52430.1 | 2.00E-99 | alpha/beta-Hydrolases superfamily protein |
| NR | XP_003523213.1 | 0 | PREDICTED: senescence-associated carboxylesterase 101-like [Glycine max] |
| COG | YP_005372852.1 | 9.00E-07 | lipase [Corallococcus coralloides DSM 2259] |
| Swissprot | tr|Q9S745|PAD4_ARATH | 2.00E-115 | Lipase-like PAD4 |
| trEMBL | tr|K7KLE8|K7KLE8_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA04G38691.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00614 | 35589 | 43622 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000614s00017194.1 | PF01764.20 | Lipase_3 | 90 | 211 | 4.40E-19 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 16.188 |
| SRR1783600 | control | 16.218 |
| SRR1783602 | moderate drought stress | 4.741 |
| SRR1811619 | moderate drought stress | 4.694 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 30.941 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 30.824 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.315 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.337 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 17.970 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 18.112 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 81.257 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 80.944 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 7.794 |
| SRR2868004 | Drought Stress (root) | 11.821 |
| SRR2967015 | Control (root) | 11.240 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 61.376 |
| SRR9715740 | Leaf | 92.706 |
| SRR9715741 | Leaf | 75.199 |
| SRR9715739 | Root | 4.814 |
| SRR9715742 | Root | 31.500 |
| SRR9715743 | Root | 27.300 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 2.965 |
| SRR8749028 | MeJA induced 9h | 3.681 |
| SRR8749029 | MeJA induced 9h | 3.087 |
| SRR8749030 | Uninduced | 6.196 |
| SRR8749031 | Uninduced | 3.348 |
| SRR8749032 | Uninduced | 2.084 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 11.187 |
| SRR8400027 | Control - Root | 14.608 |