Gene detail

Gene detail information of Glyur000614s00017193

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G01170.1	6.00E-110	bidirectional amino acid transporter 1
NR	XP_004502973.1	0	PREDICTED: amino-acid permease BAT1 homolog isoform X1 [Cicer arietinum]
COG	YP_005537245.1	2.00E-113	amino acid transporter [Amycolatopsis mediterranei S699]
Swissprot	tr\|B9EXZ6\|BAT1_ORYSJ	1.00E-137	Amino-acid permease BAT1 homolog
trEMBL	tr\|I1KBM8\|I1KBM8_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA06G16280.1}

Sequence

Transcript Sequence

>Glyur000614s00017193.1
AGGCTCTATGCTGAAGCATTCAATTTGCTAGTTGTCTTTCATTGCGAGAGAGAAAATAGTGACGCATGCATGAGTGGAAACAAATAAAGAATCCTGAGAAAATAAATGGTGCTGGAGATGATGAGTTGATGACTATTCAAACATTGCAACTAGTTTGAAAACAGTGACTCAGTGAGCCAATCTATATGAAGTTTGAATCTTTCAACTGAAACATTAGTGGGACTAGTCAAATCTTCGTCTCTACCCTCTTTTGTCTATATTTATTTATGAGAATTCTGTGTTATTTTTTCCTTCTTCTTCTTTAATATTACTCACGAACTCCTCAGAAGAAGCCTGGTTCCATGGGGAGTGAAAGCAGTACCGCGGAAGTGACAGGAAATACAGCTATGGATTCAGCAGAGAAGAGGCTCAATGAGCTTGGTTACAAGCAAGAACTGAGAAGAGAAATGACTATGTTCAAAACTCTGGCAATATCATTTTCCACAATGACCCTTTTCACTGGAATTACACCTCTCTATGGTTCTAGCCTTCAGTATGCAGGACCTGCAAGTCTTGTCTGGGGATGGCTAGTGGTTTCTTTCTTCACTTGGTTCGTTGGGATTGCAATGGCTGAGATATGCTCGTCGTTCCCGACAACTGGTTCTCTGTACTTTTGGGCTGCACATTTAGCCGGTCCGAAATGGGGACCATTTTCTTCGTGGTGCTGTGCTTGGCTCGAGACCATAGGGCTTATTGCTGGGATAGGNACTCAGGCATATGCAGGATCACAAACTTTGCAGAGTATAATCCTACTCTCAACTGGCACAAACAAAGGTGGCGGGTACTTTGCCCCAAAATGGTTATTCTTATGTATGTACATTGCCCTCACTGTTATATGGGCAGCACTGAACACATTTGCATTAGAAGTGATCGCCTTTATCGATATGATTTCGATATGGTGGCAGGTTATTGGTGGAATGGTGATAGTCATAATGTTACCTCTGGTATCACTAACTACAAAATCAGCTTCATATGTATTCACAAACTTAGAGTTAGCTCCTGATTCAACAGGAATATCAAGCAAACCATATGCAGTCATTCTATCATTTCTTGTCAGCCAGTATTCCCTCTATGGATATGATGCTGCAGCACATCTAACTGAAGAAACTAAAGGTGCAGACAGGAATGGACCCATAGCAATACTAGGTAGTATTGGGATCATTTCAGTATTTGGATGGGCTTACATCTTGGCACTTACNTTCAGCATTCAGGATTTCGGTTACCTTTATGATCCGAACAATGAGACTGCTGGAGCATTTGTGCCAGCACAAATACTCTACGATGCATTCCATGGAAGATATAACAGTTCTGCTGGAGCAATCATTCTACTATTTGTTATTTGGGGTTCATTCTTCTTTGGTGGACTTTCAATCACTACAAGTGCTGCAAGAGTGGTTTATGCTCTGTCAAGAGATAAGGGAGTTCCTTTTTCATTCTTATGGCGGCAACTGCACCCGAAGCACAAGGTTCCCTCAAATGCTGTATGGCTCTGTGCAGCAATCTGCATTCTTCTTGGCCTCCCAATTTTGAAGGTCAATGTGGTCTTCACTGCAATAACTTCAATATGCACAATTGGATGGGTTGGTGGTTATGCAGTTCCAATCTTTGCAAGACTGGTGATGCCTGAGAAGGACTTCAANCCCGGGCCGTTCTATTTGGGCAAAGCAAGAAGGCCAATCTGCCTGGTAGCATTTCTATGGATTTGTTACACATGTTCTGTGTTCCTTTTGCCAACTCTGTACCCAATTACTTGGGATACTTTCAATTATGCACCTGTTGCTCTTGGGGTGGGTTTGGGTCTGATAATGCTTTGGTGGGTGTTGGATGCAAGAAAATGGTTCAAGGGTCCAGTTAGGAATATTGATGACATTCAAAATGGCAAGGTATAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00614	33392	37098	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process

GO:0003333 amino acid transmembrane transport

GO:0006865 amino acid transport

GO:0055085 transmembrane transport

cellular_component

GO:0016020 membrane

GO:0016021 integral component of membrane

molecular_function
GO:0015171 amino acid transmembrane transporter activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000614s00017193.1	PF13520.1	AA_permease_2	38	496	1.80E-54

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	1.395
SRR1783600	control	1.422
SRR1783602	moderate drought stress	1.084
SRR1811619	moderate drought stress	1.056

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.885
DRR006520	Root Summer glycyrrhizin high producing strain	0.817
DRR006521	Root Winter glycyrrhizin high producing strain	0.174
DRR006522	Root Winter glycyrrhizin high producing strain	0.181
DRR006523	Root Summer glycyrrhizin low producing strain	0.724
DRR006524	Root Summer glycyrrhizin low producing strain	0.825
DRR006525	Leaf Summer glycyrrhizin high producing strain	5.694
DRR006526	Leaf Summer glycyrrhizin high producing strain	5.613

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	13.433
SRR2868004	Drought Stress (root)	18.812
SRR2967015	Control (root)	22.677

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	12.297
SRR9715740	Leaf	10.162
SRR9715741	Leaf	43.339
SRR9715739	Root	1.961
SRR9715742	Root	2.840
SRR9715743	Root	3.282

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	9.189
SRR8749028	MeJA induced 9h	21.477
SRR8749029	MeJA induced 9h	8.359
SRR8749030	Uninduced	16.635
SRR8749031	Uninduced	9.931
SRR8749032	Uninduced	7.090

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	8.351
SRR8400027	Control - Root	5.241