Gene detail

Gene detail information of Glyur000614s00017192

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G28605.1	6.00E-44	Photosystem II reaction center PsbP family protein
NR	XP_003602661.1	3.35E-88	PsbP domain-containing protein [Medicago truncatula]
Swissprot	tr\|Q8VY52\|PPD2_ARATH	2.00E-57	PsbP domain-containing protein 2, chloroplastic (Precursor)
trEMBL	tr\|G8A1N2\|G8A1N2_MEDTR	1.00E-88	PsbP domain-containing protein {ECO:0000313\|EMBL:AES85370.1}

Sequence

Transcript Sequence

>Glyur000614s00017192.1
AAAAAAACTCAAGATTGAAGTGGAAGTGAGTGGAACTGGATAACGATTAACCAACACCCACCAACGTCCAACGCTGTCATCTCTCGTAGATTGTTCACCTTGTGAATTTCGAAACCCAGCCCAACAAAGCTCAAAGGAAAATCCTTTATTAACTTTGCAAAAAAATGGCTTTGAAAAGTTTCTCTACCCTTTCACAAACCATATCCACCCTCTTCCACCAACATTCTCAATTCGCTCATGCTTCTTCTTCCCCAGCCTTCGTCTCAATCTTATTCCCCAAATCAACTTCAACTTCAGCTTCANCTTCACCTACTACTACCTGCATTATTCATGAACCCTCCCACAAAGACATGCAANTATTATCGCCCTGTTTCAGTAAGAGGAAACTCAACCTTGCCCTTCTGCTTAATGCATTTCTGTGGGGTGTGTTGCCTCCTATTCTTCCAGATCATGCACTGTTGTTGGCTCAAGAATTGGATTTGGAGCTTCAGAGATACACGGATTCCAAGGAAGGGTTCACTCTTCTTACACCCTCTTCTTGGACAAAGGTTGATAAGCCAGGGGCAACTGTGTTGTTTCAAGAGGAAAATATATTGGGGAGTAACAATATTGGGGTTGTGGAAAGTACAAATGAAGCGGAGGTGATTACAGTTGGAGAAAGATCAGGGAAGGGAGGTTTACAAATCTATGAATTTGAATACAGGCTTGATAGTACTCGGGGAGGGATGAAGAGAATCTTCTCTGCAGCATTTGTGGCCTCAAAGAAGCTCTATCTTCTAAACATTGCTCACTCTGATAAACCTGAGAGTCCTCTTGACCCACAAAAAAGAATGATACTAGAACAAGTTCTTCATTCCTTTGATGCAGCAAGTTAAACTCCCTGCATGAAAAATTTCGGTTCTTCTGATTCTTTTCCCCCCCTCTCTTGATTTTTGATTCTAGAGTTATGGCTACTTACTTGTGTTCAAAGCAGACTGAAATTTTTAAGGGCATATTGAACTAAATCCAGTGTACCTTTTTGTATCTCTATATTTTAATTTTTTAAGAAATATTCTTGAAGAAGTTCATTTCAAGCAACAAGGACTAACACTCATCTATTGTGATGACAACTCAACTGTATAACTCTCTGAAAATCATGTTTTACATGGAAGAAGCAAACACATNGATATGAAATTTCACTTTCTTAGGGACCTCACCAACAATGGAGTAACT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00614	29732	31893	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0015979 photosynthesis

cellular_component

GO:0009523 photosystem II

GO:0009654 photosystem II oxygen evolving complex

GO:0019898 extrinsic component of membrane

molecular_function
GO:0005509 calcium ion binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000614s00017192.1	PF01789.11	PsbP	102	151	3.70E-06
Glyur000614s00017192.1	PF01789.11	PsbP	147	212	6.20E-05

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.102
SRR1783600	control	0.172
SRR1783602	moderate drought stress	0.333
SRR1811619	moderate drought stress	0.375

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.178
DRR006520	Root Summer glycyrrhizin high producing strain	0.175
DRR006521	Root Winter glycyrrhizin high producing strain	0.000
DRR006522	Root Winter glycyrrhizin high producing strain	0.000
DRR006523	Root Summer glycyrrhizin low producing strain	0.989
DRR006524	Root Summer glycyrrhizin low producing strain	0.635
DRR006525	Leaf Summer glycyrrhizin high producing strain	13.863
DRR006526	Leaf Summer glycyrrhizin high producing strain	13.433

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	3.265
SRR2868004	Drought Stress (root)	1.928
SRR2967015	Control (root)	3.123

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	6.101
SRR9715740	Leaf	6.020
SRR9715741	Leaf	4.720
SRR9715739	Root	0.000
SRR9715742	Root	0.000
SRR9715743	Root	0.000

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	2.718
SRR8749028	MeJA induced 9h	1.217
SRR8749029	MeJA induced 9h	0.530
SRR8749030	Uninduced	0.090
SRR8749031	Uninduced	0.000
SRR8749032	Uninduced	0.058

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	0.959
SRR8400027	Control - Root	0.839