Gene detail

Gene detail information of Glyur000614s00017190

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G09230.7	9.00E-143	sirtuin 2
NR	XP_004502971.1	0	PREDICTED: NAD-dependent protein deacetylase SRT2-like [Cicer arietinum]
COG	YP_007510063.1	3.00E-67	putative Sir2-family regulator protein [Bradyrhizobium oligotrophicum S58]
Swissprot	tr\|Q94AQ6\|SIR4_ARATH	0	NAD-dependent protein deacetylase SRT2 {ECO:0000255\|HAMAP-Rule:MF_03161} (Precursor)
trEMBL	tr\|G8A1N0\|G8A1N0_MEDTR	0	NAD-dependent protein deacetylase {ECO:0000256\|HAMAP-Rule:MF_03161}

Sequence

Transcript Sequence

>Glyur000614s00017190.1
ATCCCATTGAATAACAGTTATGTTGTTTTCAATGTCTCCCACTCCCTCTCCCTCTCTCTCCTCTCTTGGGTTTGCGAGGAAAGTGCTAAGGACTATTATAACAGATATTGTTGTTAGTCCAAGGAGTGAAAATTGTCACTTAGCAAGAAGAGGAGGAAGCTTTGTGTATTTTAAGGGTTGTGTGAGGTTCGTTCAGACATCGTGCCGAATCTCTGTCCCTGGAACCTTGCCGGCAAATGATGAAAAGGCCACATCTAATATCTTGAGGGAAAAGAAGGCAGTTCCTGATGCTGATCCTCCTAGTACCAAAGATGTCAACCTTTTGTATCAATTCTTTGACCAGAGTACCAAGCTCACAGTATTGACTGGAGCTGGAATCAGCACAGAGTGTGGTATCCCCGACTATAGAAGCCCCAATGGTGCTTATAGTTCTGGTTTCAAACCAATAACCCATCAGGAGTTTCTTCGTTCAAGTCGAGCCAGGAGGCGATATTGGGCAAGGAGCTATGCTGGGTGGAGGCGATTTACTGCAGCACAGCCATCTGCTGCTCATCGTGCTTTGGCAGCATTTGAGAAAGCTGGCCGGGTTGATTTTATGATTACCCAAAATGTTGATAGGCTGCATCATCGTGCTGGTAGCAACCCATTAGAATTGCATGGGACTGTATACACTGTAATTTGTATAAATTGTGGATATTCCTTTTGCCGGAGCTTATTTCAGGACCAGTTGAAGGACCTTAATCCAAAGGTTGATGTTTTAAACCAGTGGGCAGAAGCAATTGAAAATCTGGACCATGGAAACCCTGGGTCAGACAAAAGCGTTGGAATGAAACAAAGACCTGATGGTGATATTGAGATTGATGAAAGATTTTGGGAGGAGGATTATATCATCCCAACCTGCCAGAAGTGCAATGGTGTTCTCAAACCTGATGTAGGCCATCTTGCTCCTTTCAGATTCATGATATTTCATGATATAGCTGGAANAAACAGACTGCAGGTTGTCTTCTTCGGTGATAATGTTCCCAAGGACAGAGCTGATATGGCAATGGAAGCATCTAGAGGATGTGATGCTTTCCTTGTACTAGGGTCATCTCTGATGACCATGTCTGCTTTTCGACTTGTCAGGGCAGCTCATGAGGCTGGTGCTGCTACTGCAATTGTCAATGTAGGTGTGACACGTGCTGATGATTTTGTGCCCTTGAAAATCAATGCACGATTGGGTGAGATCCTGCCGAGAGTACTTGACATGGGATCCATCAGCATACCTTCTGTGTAATGATAATAGATGAAGAGATGTACCAAGTTGCATTTGAATCCCATGTATGCCAGTTTCCCACCATGATACCCCCCACAAATTAGAACGCATTGAGTGAAGGAATGCCAACTTCAATGTTCATGAAGTGATGCTTTCAGAGTCTGGATAGATAAACATTGTAAGTTTTCATAAATATTTTCTGCACCAGATTATGCTTGTTGGTGCCTTTTTCATTGATTAAATAACTTCA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00614	23506	29006	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0070403 NAD+ binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000614s00017190.1	PF02146.12	SIR2	117	360	6.20E-37
Glyur000614s00017190.2	PF02146.12	SIR2	117	338	7.60E-43
Glyur000614s00017190.3	PF02146.12	SIR2	133	354	8.40E-43
Glyur000614s00017190.4	PF02146.12	SIR2	105	326	7.00E-43

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	6.989
SRR1783600	control	6.971
SRR1783602	moderate drought stress	4.915
SRR1811619	moderate drought stress	4.863

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	3.229
DRR006520	Root Summer glycyrrhizin high producing strain	3.208
DRR006521	Root Winter glycyrrhizin high producing strain	4.156
DRR006522	Root Winter glycyrrhizin high producing strain	3.898
DRR006523	Root Summer glycyrrhizin low producing strain	6.374
DRR006524	Root Summer glycyrrhizin low producing strain	5.970
DRR006525	Leaf Summer glycyrrhizin high producing strain	28.048
DRR006526	Leaf Summer glycyrrhizin high producing strain	27.748

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	9.134
SRR2868004	Drought Stress (root)	10.457
SRR2967015	Control (root)	10.387

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	45.860
SRR9715740	Leaf	66.465
SRR9715741	Leaf	49.043
SRR9715739	Root	2.891
SRR9715742	Root	5.541
SRR9715743	Root	5.174

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	13.142
SRR8749028	MeJA induced 9h	11.948
SRR8749029	MeJA induced 9h	9.074
SRR8749030	Uninduced	13.818
SRR8749031	Uninduced	6.576
SRR8749032	Uninduced	6.024

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	12.017
SRR8400027	Control - Root	12.303