Gene detail information of Glyur000613s00030316 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G45400.1 | 2.00E-73 | NAD(P)-binding Rossmann-fold superfamily protein |
| NR | XP_003605087.1 | 8.16E-151 | Dihydroflavonol 4-reductase [Medicago truncatula] |
| COG | YP_003514442.1 | 2.00E-20 | NAD-dependent epimerase/dehydratase [Stackebrandtia nassauensis DSM 44728] |
| Swissprot | tr|Q40316|VESTR_MEDSA | 1.00E-92 | Vestitone reductase |
| trEMBL | tr|G7JDF6|G7JDF6_MEDTR | 3.00E-151 | Dihydroflavonol 4-reductase-like protein {ECO:0000313|EMBL:AES87284.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00613 | 56634 | 64753 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000613s00030316.1 | PF01073.14 | 3Beta_HSD | 14 | 142 | 3.60E-12 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 2.122 |
| SRR1783600 | control | 2.218 |
| SRR1783602 | moderate drought stress | 2.396 |
| SRR1811619 | moderate drought stress | 2.395 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 2.030 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 1.963 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.914 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.880 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 1.684 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 1.687 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.324 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.325 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 7.954 |
| SRR2868004 | Drought Stress (root) | 6.613 |
| SRR2967015 | Control (root) | 5.287 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 0.078 |
| SRR9715740 | Leaf | 0.314 |
| SRR9715741 | Leaf | 0.000 |
| SRR9715739 | Root | 0.434 |
| SRR9715742 | Root | 0.218 |
| SRR9715743 | Root | 0.288 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 11.099 |
| SRR8749028 | MeJA induced 9h | 8.920 |
| SRR8749029 | MeJA induced 9h | 11.906 |
| SRR8749030 | Uninduced | 8.795 |
| SRR8749031 | Uninduced | 9.570 |
| SRR8749032 | Uninduced | 6.042 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 3.558 |
| SRR8400027 | Control - Root | 3.144 |