Gene detail information of Glyur000611s00026452 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G55580.1 | 2.00E-164 | Regulator of chromosome condensation (RCC1) family protein |
| NR | XP_003538429.1 | 0 | PREDICTED: ultraviolet-B receptor UVR8-like [Glycine max] |
| COG | YP_002462041.1 | 3.00E-28 | chromosome condensation regulator RCC1 [Chloroflexus aggregans DSM 9485] |
| Swissprot | tr|Q9FN03|UVR8_ARATH | 2.00E-38 | Ultraviolet-B receptor UVR8 |
| trEMBL | tr|I1LMJ3|I1LMJ3_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA11G34470.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00611 | 128508 | 135910 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000611s00026452.1 | PF13540.1 | RCC1_2 | 219 | 248 | 3.70E-08 |
| Glyur000611s00026452.1 | PF00415.13 | RCC1 | 315 | 363 | 6.80E-08 |
| Glyur000611s00026452.1 | PF00415.13 | RCC1 | 367 | 418 | 1.80E-12 |
| Glyur000611s00026452.1 | PF00415.13 | RCC1 | 421 | 469 | 2.30E-12 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 4.529 |
| SRR1783600 | control | 4.460 |
| SRR1783602 | moderate drought stress | 6.115 |
| SRR1811619 | moderate drought stress | 6.151 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 7.569 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 7.663 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 58.805 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 57.331 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 3.422 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 3.767 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 6.519 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 6.567 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 30.946 |
| SRR2868004 | Drought Stress (root) | 44.503 |
| SRR2967015 | Control (root) | 23.450 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 41.946 |
| SRR9715740 | Leaf | 56.060 |
| SRR9715741 | Leaf | 45.282 |
| SRR9715739 | Root | 10.401 |
| SRR9715742 | Root | 17.592 |
| SRR9715743 | Root | 18.329 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 7.516 |
| SRR8749028 | MeJA induced 9h | 16.037 |
| SRR8749029 | MeJA induced 9h | 11.710 |
| SRR8749030 | Uninduced | 6.034 |
| SRR8749031 | Uninduced | 3.691 |
| SRR8749032 | Uninduced | 6.123 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 17.200 |
| SRR8400027 | Control - Root | 12.314 |