Gene detail

Gene detail information of Glyur000611s00026448.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G39800.4	0	delta1-pyrroline-5-carboxylate synthase 1
NR	KHN07602.1	0	Delta-1-pyrroline-5-carboxylate synthase [Glycine soja]
COG	YP_007082681.1	1.00E-93	gamma-glutamyl phosphate reductase [Pleurocapsa sp. PCC 7327]
Swissprot	tr\|P32296\|P5CS_VIGAC	0	Gamma-glutamyl phosphate reductase
trEMBL	tr\|Q6RUF7\|Q6RUF7_SOYBN	0	Delta-pyrroline-5-carboxylate synthetase {ECO:0000313\|EMBL:AAR86688.1}

Sequence

Transcript Sequence

>Glyur000611s00026448.1
CACGTGATATTAAGATATTGTATTACGGCTGGACTCTCTGTTCTGTAGTGTCTCTCCTCTTCTCTTCGCTAGCAACACCGCAGCCCAACACTCCATTGGTCAGAAAAAATGGAGAACGCAGATCCTTGTAGAGATTTCATGAAAGATGTCAAGCGCATCATCATCAAGGTTGGGACTGCTGTTGTCACCCGCCAAGATGGAAGACTAGCGGTTGGAAAATTAGGGGCACTCTGTGAGCAGATTAAGGAGCTGAACTCTCTGGGTTATGAGGTTATTTTGGTGTCATCAGGTGCTGTTGGCCTTGGTCGCCAAAGGCTCAGATACAGGAAATTGATTAACAGCAGCTTTGCTGACCTTCAGAANCCACAAGTTGAACTTGATGGCAAGGCCTGTGCTGCTGTTGGACAAAGCAGCCTTATGGCTCTTTATGATACTGTGTTTAGTCAGCTGGACGTGACATCTGCTCAGCTTCTTGTGACGGACAATGATTTTAGAGACAAAGATTTTAGAAAGCAGCTTAGTGAAACTGTGAAATCACTGCTATCGCTAAAAGTTATTCCCATATTCAATGAGAACGATGCAGTCAGTACTAGGAAAGCTCCATATGAGGATTCTTCTGGCATATTTTGGGATAATGACAGTTTATCAGCTTTATTGGCCTTGGAATTAAAAGCTGATCTTCTTATTTTGCTGAGTGACGTAGAGGGTCTTTATAGTGGNCCTCCAAGTGATCCACATTCAAAGCTTATTCATACATACATTAAGGAAAAGCATCAAAATGAAATTACTTTTGGAGACAAGTCTAGGGTGGGAAGAGGTGGAATGACTGCCAAAGTAAAAGCTTCTGTTCATGCAGCTGAAGCTGGCATTCCTGTTATCATTACCAGTGGTTATGCACCTGAAAATATCATTAAAGTCCTCCAAGGACAACGTATTGGTACCCTCTTCCATAAAGATGCACATAAGTGGGCCCCACCAAAAGAGGTTGATGCACGCGAGATGGCAATTGCAGCTAGGGACTGTTCCAGACGGCTTCAGGCCTTATCTTCGGAAGAGAGGAAACAAATTTTGCTAAAAATTGCTGATGCCCTGGAAGCACATCAAAAAGAGATCAGGATTGAGAATGAAGCTGATGTTGCTGCTGCGCAAGAAGCAGGATATGAAAAATCCTTAATTGCAAGCCTTGCCAACAACATACGAGTTATTGCAAACATGGAAGATCCGATTGGTCGAGTGTTAAAACGAACTGAGCTTTCAGAGGGGCTAATTTTGGAGAAAACATCATCTCCTTTGGGAGTTCTTTTAATTGTTTTTGAGTCTCGCCCTGATGCTCTAGTACAGATAGCTTCATTGGCAATCAGAAGTGGGAATGGGCTTCTCTTGAAAGGAGGCAAGGAGGCTAAGCGATCCAATGCAATTTTGCACAAAGTAATTACTGAAGCCATACCAGATACTGTTGGTGGAAAGCTTATTGGACTTGTGACATCAAGAGCAGAAATTCCTGAGCTACTTAAGCTGGATGATGTAATTGATCTGGTGATTCCAAGGGGAAGCAACAAACTTGTCTCTCAGATCAAGAGTTCCACCAAAATTCCTGTTCTGGGTCATGCTGATGGAATTTGTCACGTCTATGTCGATAAATCTGCTAATTTGGAGATGGCAAGGCGGATTGTACTCGATGCAAAGACAGATTATCCATCAGGGTGCAATGCCATGGCTCGTTCACTTCATCACGAGTACTGTTCGTTGGCTTGCACTGTTGAAATTGTGGATGATGTTTATGCAGCTATTGAGCATATAAATCTTTATGGAAGGCATGTCACTCTTATGGAAATTTGTCACCTTTTTCTCCTTTGTNGCAGTTCACATACTGATTCCATCATCACAGAAGATCATGAAGTAGCTGATGTATTTTTACGCCAAGTAGACAGTGCTGCTGTTTTTCACAATGCTAGTACAAGATTCAGTGATGGGGCACGATTTGGACTAGGCGCAGAGGATTCTCAAAGGAAGTGGACAAGTAGTAGATGGTGATAAAGGAGTTAGCTACACCCACAGAGACCTTGTTACTTGATACGTAATTTTTGCTAGTAACTAACTTGAAAAAATCCACGTCACTACTCTTCATGAAGGGAGGGGAGGCAGGGAAGGTCACTTGGTTGTGCTTTTATTTTCTTTAGCCTTTTTTTTTTTTCTCGTGTTTTGAGAGTGGGGCTAAAATTGTACAATTCATTAGAGAGAGGATGATATTTGCGTTTCCTGTTGTTACTTTTCCGTTCATGGTGTTGTACAAGAGAATTGCTT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00611	86277	93503	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K12657	ALDH18A1, P5CS	EC:2.7.2.11 1.2.1.41	Biosynthesis of amino acids	map01230
			Arginine and proline metabolism	map00330

Gene Ontology

biological_process

GO:0006561 proline biosynthetic process

GO:0008152 metabolic process

GO:0055114 oxidation-reduction process

cellular_component
GO:0005737 cytoplasm

molecular_function

GO:0003824 catalytic activity

GO:0004349 glutamate 5-kinase activity

GO:0016491 oxidoreductase activity

GO:0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000611s00026448.1	PF00696.23	AA_kinase	15	260	1.60E-35
Glyur000611s00026448.1	PF00171.17	Aldedh	292	527	3.80E-08

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	23.240
SRR1783600	control	23.287
SRR1783602	moderate drought stress	30.670
SRR1811619	moderate drought stress	30.367

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	23.653
DRR006520	Root Summer glycyrrhizin high producing strain	23.297
DRR006521	Root Winter glycyrrhizin high producing strain	23.085
DRR006522	Root Winter glycyrrhizin high producing strain	21.235
DRR006523	Root Summer glycyrrhizin low producing strain	19.502
DRR006524	Root Summer glycyrrhizin low producing strain	20.061
DRR006525	Leaf Summer glycyrrhizin high producing strain	15.915
DRR006526	Leaf Summer glycyrrhizin high producing strain	15.561

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	26.124
SRR2868004	Drought Stress (root)	28.963
SRR2967015	Control (root)	31.428

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	15.627
SRR9715740	Leaf	16.039
SRR9715741	Leaf	16.614
SRR9715739	Root	6.702
SRR9715742	Root	18.368
SRR9715743	Root	16.245

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	16.703
SRR8749028	MeJA induced 9h	23.069
SRR8749029	MeJA induced 9h	15.872
SRR8749030	Uninduced	39.574
SRR8749031	Uninduced	18.569
SRR8749032	Uninduced	19.595

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	29.480
SRR8400027	Control - Root	27.117