Gene detail

Gene detail information of Glyur000611s00026444.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G05980.1	1.00E-177	DHFS-FPGS homolog B
NR	XP_006601980.1	0	PREDICTED: folylpolyglutamate synthase-like isoform X2 [Glycine max]
COG	YP_007298356.1	3.00E-52	folylpolyglutamate synthase/dihydrofolate synthase [Thermoanaerobacterium thermosaccharolyticum M0795]
Swissprot	tr\|F4K2A1\|FPGS1_ARATH	0	Folylpolyglutamate synthase {ECO:0000250\|UniProtKB:Q05932, ECO:0000312\|EMBL:CAC80839.2}
trEMBL	tr\|K7MPN5\|K7MPN5_SOYBN	0	Folylpolyglutamate synthase {ECO:0000256\|PIRNR:PIRNR038895}

Sequence

Transcript Sequence

>Glyur000611s00026444.1
ATGGCTGAAGAAAGAGATAAAGGATCCNCAATAGCTTCGTCATTGACACCGTATGAAGAAGCATTGGATGCCTTGTCGTCTTTGATCACTAAACGCACTCGTGTTGGTGATGTCAATATGGAGGAGCGATTCAACGTGCTATTCGAGTACCTAAAGATGCTTGATTTGGAGGAGGCGATTTCAAATATGAAGATTATCCATGTTGCTGGTACCAAAGGGAAGGGATCTACATGCACCTTCACAGAATCTATATTACGCAACTGTGGTTTTCGCACTGGGCTTTTCACTTCTCCTCACCTAATTGATATCCGAGAAAGGTTTCGTTTAGATGGTGTGGAAATCTGTGAAGAGAAGTTTTTAGAATATTTCTGGTGGTGTTATGATAGACTAAAGGAAAAAACTGATGACAAAGTTCCAATGCCTACCTTTTTTCACTTCCTTGCTTTACTTGCCTTCAAGATATTTGCAGCAGAGCAGGTGGATGTTTCTATAATGGAGGTTGGATTAGGTGGCAAATACGATGCAACAAATGTGGTGCAGGCACCTATTGTGTGTGGTATAACTTCTCTTGGGTATGACCACATGGAAATTCTTGGGAACACTCTTGGAGAAATTGCTGGTGAGAAGGCTGGAATCTTCAAGCATCGGATTCCAGCATTTACAGTGCCTCAGCCTGATGAAGCAATGCATGTACTTAAAGAGAAGGCTTCTCAGTTAAATGTANCTCTTCAAGTGGCAACACCATTAGATGCCAAATTGCTAAATGGTTTAAGACTAGGGCTTGAAGGTGAGCACCAATATATAAATGCTGGTCTTGCTGTTGTGTTATGCTCTACGTGGCTGAAGATAAATGGTCGTCTTGAAGAGAAACAGATACAACACACTTTGCCGGAGGAGTTCATAAAGGGTTTAGCAACTGCAAGTCTGCAAGGAAGGGCTCAGATTGTTCGTGATCAACACATCAACAATGGAACCTCAGACNAACTTGTCTTCTTTTTAGATGGGGCTCATAGTCCTGAAAGCATGGAAGCATGTGCAAGATGGTTTTCTCTTGCTATTAAAGACCAGAACCAGGCGTTGTTTCATCAGAAACCTGATAATTCCAACTTCTTGAACGAAGTGGTGAAGATGCACCAAGGTGAAGCACAAAAAAAATCTGCACAGATTTTGCTGTTCAATTGTATGTCTGTGCGGGATCCTCAGNTTCTTCTTCCTCACTTGATGAAAACTTGTGCTGATCAGGGTGTCTACTTCAAGAAGGCGATCTTTGTACCTGGTTTATCAGTGTATCACAAAGTTGGATCCCATGCTTTAACACCAACTGAATCTGACATTGACCTGTCGTGGCAGTTCACTCTACAAAGAGAGTGGGAAAATCTCATGCAAGGGAACAAAGTGTTTTCCTCATTGCCCCTTGTTATCAAATGGCTTAGGGACAGAGTGCAACAAAACCAGTCAACTCGCTTTCAGGTCCTCGTAACTGGTTCCTTACATCTCATTGGTGACGTGTTGAAATTAATCAAGAAGTGATTCATTCATTGGACACTAAATTGAAAGATTTGGCTTCCATTCTGATTTCTAAGTAATGAAGTGCTAATACTACTCTACTTGACGTTATCCCACGAGAGATGTGTGTCATTCAGAGCCCATTCAAGTGGATAACTGCTGACAGAATGTTATCAACACAACCACATCATTACATACGGTCCATTGGTTTGTTTCAGCATCAGTGGTGGCTGGTGACTTTCTATGGGCCTCTTTCAATCTTCATTTGATTGTAGTTGAAAAAGAAAAAGGGTGGATTTAAGGGGGATGAATCGGTGGGGTTCTATATATGTAATACAGGGAGAAAAAAAAAATTTGGTCAAAGTTGCA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00611	52736	63278	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K01930	FPGS	EC:6.3.2.17	Folate biosynthesis	map00790
			Antifolate resistance	map01523

Gene Ontology

biological_process

GO:0009058 biosynthetic process

GO:0009396 folic acid-containing compound biosynthetic process

molecular_function

GO:0004326 tetrahydrofolylpolyglutamate synthase activity

GO:0005524 ATP binding

GO:0016874 ligase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000611s00026444.1	PF08245.7	Mur_ligase_M	68	236	2.40E-07

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	7.191
SRR1783600	control	7.326
SRR1783602	moderate drought stress	9.262
SRR1811619	moderate drought stress	9.304

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	14.639
DRR006520	Root Summer glycyrrhizin high producing strain	15.770
DRR006521	Root Winter glycyrrhizin high producing strain	21.754
DRR006522	Root Winter glycyrrhizin high producing strain	21.621
DRR006523	Root Summer glycyrrhizin low producing strain	14.124
DRR006524	Root Summer glycyrrhizin low producing strain	14.390
DRR006525	Leaf Summer glycyrrhizin high producing strain	8.150
DRR006526	Leaf Summer glycyrrhizin high producing strain	7.861

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	14.531
SRR2868004	Drought Stress (root)	13.480
SRR2967015	Control (root)	12.102

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	5.582
SRR9715740	Leaf	6.883
SRR9715741	Leaf	8.900
SRR9715739	Root	4.693
SRR9715742	Root	8.242
SRR9715743	Root	7.928

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	13.750
SRR8749028	MeJA induced 9h	17.316
SRR8749029	MeJA induced 9h	10.866
SRR8749030	Uninduced	11.952
SRR8749031	Uninduced	11.667
SRR8749032	Uninduced	13.497

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	17.200
SRR8400027	Control - Root	16.587