Gene detail information of Glyur000610s00022583 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G63430.1 | 3.00E-57 | |
| NR | XP_004493729.1 | 0 | PREDICTED: protein LONGIFOLIA 1-like [Cicer arietinum] |
| Swissprot | tr|Q9LF24|LNG1_ARATH | 2.00E-27 | Protein LONGIFOLIA 1 |
| trEMBL | tr|A0A072UDE6|A0A072UDE6_MEDTR | 0 | DUF4378 domain protein {ECO:0000313|EMBL:KEH23840.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00610 | 78442 | 82868 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000610s00022583.1 | PF14309.1 | DUF4378 | 553 | 691 | 2.90E-14 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 47.396 |
| SRR1783600 | control | 47.524 |
| SRR1783602 | moderate drought stress | 37.515 |
| SRR1811619 | moderate drought stress | 37.449 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 19.930 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 19.621 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 2.620 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 2.479 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 14.892 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 14.798 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 6.159 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 6.213 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 18.360 |
| SRR2868004 | Drought Stress (root) | 9.851 |
| SRR2967015 | Control (root) | 11.109 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 3.906 |
| SRR9715740 | Leaf | 1.746 |
| SRR9715741 | Leaf | 1.620 |
| SRR9715739 | Root | 11.492 |
| SRR9715742 | Root | 18.559 |
| SRR9715743 | Root | 16.661 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 5.877 |
| SRR8749028 | MeJA induced 9h | 1.087 |
| SRR8749029 | MeJA induced 9h | 1.473 |
| SRR8749030 | Uninduced | 0.150 |
| SRR8749031 | Uninduced | 0.136 |
| SRR8749032 | Uninduced | 0.262 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 28.468 |
| SRR8400027 | Control - Root | 31.338 |