Gene detail information of Glyur000610s00022582 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G03055.1 | 1.00E-45 | |
| NR | XP_003520579.1 | 7.65E-114 | PREDICTED: beta-carotene isomerase D27, chloroplastic-like [Glycine max] |
| Swissprot | tr|C7AU21|D27_ORYSJ | 5.00E-73 | Beta-carotene isomerase D27, chloroplastic (Precursor) |
| trEMBL | tr|R4HZ96|R4HZ96_MEDTR | 2.00E-109 | Dwarf 27 {ECO:0000313|EMBL:AEW07379.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00610 | 66622 | 70457 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| K17911 | DWARF27 | EC:5.2.1.14 | Carotenoid biosynthesis | map00906 |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000610s00022582.1 | PF13225.1 | DUF4033 | 203 | 266 | 3.90E-26 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.194 |
| SRR1783600 | control | 0.108 |
| SRR1783602 | moderate drought stress | 0.366 |
| SRR1811619 | moderate drought stress | 0.324 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 3.120 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 2.941 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 1.500 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 1.474 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.000 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 9.449 |
| SRR2868004 | Drought Stress (root) | 8.024 |
| SRR2967015 | Control (root) | 3.744 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 0.000 |
| SRR9715740 | Leaf | 0.224 |
| SRR9715741 | Leaf | 0.045 |
| SRR9715739 | Root | 0.000 |
| SRR9715742 | Root | 0.336 |
| SRR9715743 | Root | 0.236 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.000 |
| SRR8749028 | MeJA induced 9h | 0.000 |
| SRR8749029 | MeJA induced 9h | 0.036 |
| SRR8749030 | Uninduced | 0.000 |
| SRR8749031 | Uninduced | 0.075 |
| SRR8749032 | Uninduced | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 2.719 |
| SRR8400027 | Control - Root | 1.890 |