Gene detail information of Glyur000610s00022581 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G54560.1 | 1.00E-53 | histone H2A 11 |
| NR | XP_007144679.1 | 2.38E-82 | hypothetical protein PHAVU_007G176000g [Phaseolus vulgaris] |
| Swissprot | tr|Q84MP7|H2AV3_ORYSJ | 1.00E-76 | Probable histone H2A variant 3 |
| trEMBL | tr|V7BIB4|V7BIB4_PHAVU | 9.00E-83 | Histone H2A {ECO:0000256|RuleBase:RU003556} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00610 | 63554 | 64381 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000610s00022581.1 | PF00125.19 | Histone | 33 | 107 | 1.50E-23 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 12.788 |
| SRR1783600 | control | 12.815 |
| SRR1783602 | moderate drought stress | 8.074 |
| SRR1811619 | moderate drought stress | 8.374 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 24.440 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 24.441 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.330 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.345 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 10.098 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 9.922 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 4.085 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 3.971 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 102.237 |
| SRR2868004 | Drought Stress (root) | 47.830 |
| SRR2967015 | Control (root) | 52.801 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 24.279 |
| SRR9715740 | Leaf | 0.438 |
| SRR9715741 | Leaf | 6.639 |
| SRR9715739 | Root | 27.981 |
| SRR9715742 | Root | 10.290 |
| SRR9715743 | Root | 14.948 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 92.424 |
| SRR8749028 | MeJA induced 9h | 28.484 |
| SRR8749029 | MeJA induced 9h | 71.677 |
| SRR8749030 | Uninduced | 8.679 |
| SRR8749031 | Uninduced | 3.481 |
| SRR8749032 | Uninduced | 6.220 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 94.438 |
| SRR8400027 | Control - Root | 79.427 |