Gene detail

Gene detail information of Glyur000610s00022574

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G02620.1	1.00E-59	vacuolar ATPase subunit F family protein
NR	AFK39315.1	2.30E-82	unknown [Lotus japonicus]
COG	YP_184014.1	1.00E-06	V-type ATP synthase subunit F [Thermococcus kodakarensis KOD1]
Swissprot	tr\|Q9ZQX4\|VATF_ARATH	1.00E-75	V-type proton ATPase subunit F
trEMBL	tr\|I3T175\|I3T175_LOTJA	9.00E-83	V-type proton ATPase subunit F {ECO:0000256\|PIRNR:PIRNR015945}

Sequence

Transcript Sequence

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00610	26505	30139	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process

GO:0015991 ATP hydrolysis coupled proton transport

GO:0034220 ion transmembrane transport

cellular_component
GO:0033180 proton-transporting V-type ATPase, V1 domain

molecular_function
GO:0046961 proton-transporting ATPase activity, rotational mechanism

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Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000610s00022574.1	PF01990.12	ATP-synt_F	15	115	5.40E-29
Glyur000610s00022574.2	PF01990.12	ATP-synt_F	15	115	5.40E-29
Glyur000610s00022574.3	PF01990.12	ATP-synt_F	15	115	5.40E-29

Expression pattern

SRA Experiment	Description	TPM
SRR1783599	control	8.604
SRR1783600	control	8.464
SRR1783602	moderate drought stress	7.332
SRR1811619	moderate drought stress	7.001

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	29.361
DRR006520	Root Summer glycyrrhizin high producing strain	28.517
DRR006521	Root Winter glycyrrhizin high producing strain	12.758
DRR006522	Root Winter glycyrrhizin high producing strain	13.033
DRR006523	Root Summer glycyrrhizin low producing strain	21.672
DRR006524	Root Summer glycyrrhizin low producing strain	22.252
DRR006525	Leaf Summer glycyrrhizin high producing strain	27.036
DRR006526	Leaf Summer glycyrrhizin high producing strain	27.179

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	44.304
SRR2868004	Drought Stress (root)	33.346
SRR2967015	Control (root)	29.356

SRA Experiment	Description	TPM
SRR9715738	Leaf	28.418
SRR9715740	Leaf	46.388
SRR9715741	Leaf	28.441
SRR9715739	Root	7.991
SRR9715742	Root	11.323
SRR9715743	Root	10.876

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	13.678
SRR8749028	MeJA induced 9h	13.852
SRR8749029	MeJA induced 9h	16.135
SRR8749030	Uninduced	14.191
SRR8749031	Uninduced	10.829
SRR8749032	Uninduced	11.505

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	48.732
SRR8400027	Control - Root	48.851