Gene detail

Gene detail information of Glyur000610s00022573.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G54640.1	1.00E-126	tryptophan synthase alpha chain
NR	AFK33699.1	0	unknown [Lotus japonicus]
COG	YP_005069277.1	8.00E-103	tryptophan synthase alpha chain [Arthrospira platensis NIES-39]
Swissprot	tr\|O22765\|TRPA1_ARATH	4.00E-159	Tryptophan synthase alpha chain
trEMBL	tr\|I3S0A7\|I3S0A7_LOTJA	0	Uncharacterized protein {ECO:0000313\|EMBL:AFK33699.1}

Sequence

Transcript Sequence

>Glyur000610s00022573.1
CTGAAACTCATCCATTTTTTTCACATTTGATTTATATACAGTATTGATTTTAATTAATTGATTTTTTTTAAATTGCCCACTTAGACACATGACTCTGTAATAATGTAATAAAAAATTGAAAATAAAAGAGACAGGGAGAGTGCTGAATAGTGAATACAAGGGATTGGAGNAGAGAAGACATAGAAAGAGTACTCAGCGGAAACCCATTCTCTGACTCCCTTTGCACCGTTAACTCCACTTTCATTGATTTCGGTTTCTAGTGGAAATTCGGAAGACAACTGGTTTTTATGGCAATTGCCCTGAAATCATCTTGCTTCTTGCAATTGAAGAAACCTGAGGCCGGTTTCCAGGTCTGTTTTAACCCCAAGAAACCTATAATATCGGTGAAAAGACACACTCCGGTGGCTGCAATCAGAACCATGGAAGCAGTTGGGCTATCTGAAACATTCAACAGGCTTAAAAAACAAGGAAAAGTGGCTTTAATCCCATACATCACAGCCGGTGATCCTGACCTTTCAACCACTGCAGAAGCACTNAAAGTGCTTGATTCATGCGGATCTGACATAATTGAGCTGGGTATTCCATACTCTGATCCTTTGGCAGATGGTCCTGTTATCCAGGCCGCTGCTACACGATCTTTAGCAAGGGGGGCCAATTTTAATGCGATTATTTCTATGTTGAAGGAGGTCATTCCACAATTATCTTGTCCAATTGCACTGTTTTCTTATTACAACCCAATACTGAAGCGTGGTACTGAGAGATTTATGTCCACCATAAGAGAAAGTGGCGCACATGGGCTTGTAGTCCCTGATGTACCTCTGGAGGAGACAGAAATTTTAAGGACTGAAGCTAAGAAGAATGGGATTGAACTGGTACTTCTGACAACACCCACCACTCCAACAAACCGAATGAAAGCCATTGTTGATGCTTCAGAAGGATTTGTGTATCTTGTGAGCTCTGTGGGGGTCACTGGAGCCCGAGCATCAGTTAGTGGTAAAGTTCAGTCTCTTTTGCAGGAAATCAAAGAGGCAACAAATAAGCCTGTGGCAGTTGGTTTTGGGATATCGAAACCTGAGCATGTGAAGCAGGTAGCGGGATGGGGAGCTGATGGTGTAATTGTTGGCAGTGCTATGGTGAAGTTGCTTGGTGAGGCCAAATCTCCTCAAGAGGGATTGAAAGAACTGGAAAATTTCACCCGCTCCTTAAAATCAGCACTTCCATGAAATTAGCTCGAACTTCTAGTAGTTGTTGTCTTTATAGATAATGGATTGAAAAAGGATATGTTGTTTAATTTTATTT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00610	21872	25745	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K01695	trpA	EC:4.2.1.20	Biosynthesis of amino acids	map01230
			Glycine, serine and threonine metabolism	map00260
			Phenylalanine, tyrosine and tryptophan biosynthesis	map00400

Gene Ontology

biological_process

GO:0006568 tryptophan metabolic process

GO:0008152 metabolic process

molecular_function

GO:0003824 catalytic activity

GO:0004834 tryptophan synthase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000610s00022573.1	PF00290.15	Trp_syntA	54	309	4.80E-97

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	76.915
SRR1783600	control	77.024
SRR1783602	moderate drought stress	70.205
SRR1811619	moderate drought stress	69.743

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	70.744
DRR006520	Root Summer glycyrrhizin high producing strain	70.462
DRR006521	Root Winter glycyrrhizin high producing strain	55.771
DRR006522	Root Winter glycyrrhizin high producing strain	54.087
DRR006523	Root Summer glycyrrhizin low producing strain	68.543
DRR006524	Root Summer glycyrrhizin low producing strain	68.856
DRR006525	Leaf Summer glycyrrhizin high producing strain	24.980
DRR006526	Leaf Summer glycyrrhizin high producing strain	24.627

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	76.434
SRR2868004	Drought Stress (root)	67.730
SRR2967015	Control (root)	64.682

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	30.281
SRR9715740	Leaf	32.818
SRR9715741	Leaf	34.059
SRR9715739	Root	54.146
SRR9715742	Root	52.409
SRR9715743	Root	52.189

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	71.755
SRR8749028	MeJA induced 9h	54.372
SRR8749029	MeJA induced 9h	63.928
SRR8749030	Uninduced	35.002
SRR8749031	Uninduced	16.786
SRR8749032	Uninduced	33.336

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	85.142
SRR8400027	Control - Root	87.440