Gene detail

Gene detail information of Glyur000610s00022571.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G43700.1	2.00E-52	AUX/IAA transcriptional regulator family protein
NR	XP_003521267.1	3.07E-107	PREDICTED: auxin-induced protein 22E-like [Glycine max]
Swissprot	tr\|O24543\|AX22E_VIGRR	6.00E-98	Auxin-induced protein 22E
trEMBL	tr\|I1JNZ0\|I1JNZ0_SOYBN	1.00E-107	Auxin-induced protein {ECO:0000256\|RuleBase:RU004549}

Sequence

Transcript Sequence

>Glyur000610s00022571.1
CACACCTATACTATCTAAGTCACACAACACAACCACATCTTCTAATTCCTATATCTCAATTCATTCCCAATCAATANCAAAATTCAGAATTGAAGGTGATCAATCAAATTTCATTGACATTAATTTGTAAGCTAGAAGAAGAATATATATAATGGGGAGCTATGAAATTACTGANATGAATGATCTGAAGGACACAGAGTTAAGGTTGGGATTGCCTGGCTCTGTTGTTAGGAACAACAAGAGATCTTCACCGGAAACCAGTGTGGAAGAGTCCATGTGCAAGAGCAACGTTGCTTCTGATTCCTCCTCAACCACAAGTGACCATGACCAAACCAGTGTTCAACCCACAAAGGTACAAGTAGTGGGATGGCCACCAATTCGATCTTATAGGAAGAACAATGTACAACAACAGAAGAAGGTGGAACAGGGTGATGGAGGTGGAATGTATGTGAAAGTGAGCATGGCTGGTGCACCTTACTTGAGGAAGCTAGATCTCAATGTTTATAACAGCTATCCAGAACTCCTCATGGCCTTGCAAAATATGTTCAAGTGCACATTTGGTGAATATTCTGAAAGAGAAGGCTACAATGGATCTGAATATGCTCCTACTTATGAGGACAAGGATGGTGACTGGATGCTGGTTGGAGATGTTCCATGGAACATGTTCATGTCCTCCTGCAAGAGGCTGAGGATAGTGAAAGGATCAGAAGCAAAGGGGTTGGCATGTTTATGAGCTATTATGACCCCACAAAATTAACAAAAGCAAATGCAGGAATTGAAGACATATATACCTAATTAACACACAACAGAGAGGTCTTCCAAAAACAAGCAGCAAGTACCTTGTCTCTGTGAGAAATCAAATGAAGCTTATGACCAGAAAGACAAGACAGACATATATATACTTTCCTTTTCATTTATTTATTTCAATATAGAGGTGGCTTTGAGACCTGTTTCTTTAGTTACTATAGCCTTCTGGAAAATTCTACTGGAACGGAAAACAGAAATAGAAAGAGANAGAAAATAAAAAGAAAAGCTAGTGCTATTTTAATTGTACATATATATGATATGATATAAATATATAATAGGCTTTAACATGTTTTTGGTCCCTCTAAATATCGGCGTTTTGAATTTAGTCCCTCTAAAAAAAGTCAAAGTTTTTTGGTCCCTCAAGAAAT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00610	10771	12334	+

Gene family

Gene family	subfamily
Transcription Factors Family	AUX/IAA
EAR motif-containing Proteins	AUX/IAA

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006355 regulation of transcription, DNA-templated

cellular_component
GO:0005634 nucleus

molecular_function
GO:0046983 protein dimerization activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000610s00022571.1	PF02309.11	AUX_IAA	11	192	2.20E-66

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.401
SRR1783600	control	0.378
SRR1783602	moderate drought stress	0.039
SRR1811619	moderate drought stress	0.039

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	6.632
DRR006520	Root Summer glycyrrhizin high producing strain	6.953
DRR006521	Root Winter glycyrrhizin high producing strain	0.000
DRR006522	Root Winter glycyrrhizin high producing strain	0.000
DRR006523	Root Summer glycyrrhizin low producing strain	7.971
DRR006524	Root Summer glycyrrhizin low producing strain	7.812
DRR006525	Leaf Summer glycyrrhizin high producing strain	36.696
DRR006526	Leaf Summer glycyrrhizin high producing strain	36.655

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	7.361
SRR2868004	Drought Stress (root)	5.234
SRR2967015	Control (root)	5.844

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	59.285
SRR9715740	Leaf	14.150
SRR9715741	Leaf	18.127
SRR9715739	Root	0.233
SRR9715742	Root	2.794
SRR9715743	Root	2.075

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	2.887
SRR8749028	MeJA induced 9h	0.647
SRR8749029	MeJA induced 9h	2.115
SRR8749030	Uninduced	0.487
SRR8749031	Uninduced	0.195
SRR8749032	Uninduced	0.378

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	2.556
SRR8400027	Control - Root	8.376