Gene detail

Gene detail information of Glyur000609s00035428

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G41560.1	2.00E-139	autoinhibited Ca(2+)-ATPase, isoform 4
NR	XP_004498043.1	0	PREDICTED: calcium-transporting ATPase 4, plasma membrane-type-like [Cicer arietinum]
COG	YP_501831.1	8.00E-56	calcium-translocating P-type ATPase, PMCA-type [Methanospirillum hungatei JF-1]
Swissprot	tr\|O22218\|ACA4_ARATH	1.00E-172	Calcium-transporting ATPase 4, plasma membrane-type
trEMBL	tr\|Q93YX7\|Q93YX7_MEDTR	0	Calcium-transporting ATPase {ECO:0000256\|RuleBase:RU361146}

Sequence

Transcript Sequence

>Glyur000609s00035428.1
ATGATAGTTACAACTGTTGGCATGAGGACTGAATGGGGGAGGTTGATGGAAACCTTGAATGAGGGAGGAGAGGATGAGACTCCACTGCAGGTGAAATTGAATGGAGTTGCTACAATTATTGGTAAAATTGGTTTGACTTTTGCTGTGTTGACATTTGTTGTGTTGACTGCAAGGTTTGTGATTGAAAAAGCAGTTCAAGGGGAATTCAGTAGTTGGTCTTCAAATGATGCACTAAAGTTGCTAGACTACTTTGCTATTGCTGTAACAATAATAGTTGTTGCAATTCCTGAAGGATTACCATTAGCTGTGACACTCAGTCTTGCTTTTGCAATGAAAAAATTAATGAAAGACAGGGCACTTGTGAGACATCTTTCTGCGTGTGAGACTATGGGATCAGCTACCTGCATTTGCACAGATAAGACGGGGACATTGACAACCAACCATATGGTGGTTACTAAAATTTGGACATGCGAAAAGACCATGGAGATGAAAGGTAATGAGAGTGCAGACAAACTAAAAANAGAGATATCTGAAAACGCTCTAAGCATCCTTTTGCAGGCTATATTTCAAAATACTTCCTCAGAAGTAGTTAAAGACAAAGACGGAAAGCAGACAATATTGGGAACACCAACAGAAGCAGCATTATTGGAATTTGGCTTGCTTTCAGGTGGTGATTTCGATGGCCAGCGTAGAGCCTGTAAGATACTTAAGATGGAGCCTTTCAACTCAACCCGGAAGAAGATGTNTGCTAAGATTGTCAATGATGTTATAAATGGCTTTGCCTGTGATGCTTTGAGAACTCTTTGTTTGGCTGTCAAAGATATAGATGAAACACAAGGGGAAGCTACTATCCCTGATACCATTGTGGGAATCAAGGATCCTGTTCNCCCCGGAGTTAGGGAGGCTGTTCAAACTTGTTTAGCAGCTGGAATAACTGTCCGCATGGTCACTGGTGATAACATCAATACAGCTAGGGCCATAGCTAAAGAATGTGGTATACTTACCGAGAATGGTGTAGCCATAGAGGGACCGGCATTCCGTGACTTGTCTCCAGAGCAAATGAAGGATATCATACCAAGAATTCAG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00609	137847	139423	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

cellular_component
GO:0016021 integral component of membrane

molecular_function

GO:0000166 nucleotide binding

GO:0046872 metal ion binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000609s00035428.1	PF00122.15	E1-E2_ATPase	1	129	7.60E-29
Glyur000609s00035428.1	PF00702.21	Hydrolase	134	342	1.00E-17

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	16.360
SRR1783600	control	15.727
SRR1783602	moderate drought stress	17.449
SRR1811619	moderate drought stress	17.321

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	10.475
DRR006520	Root Summer glycyrrhizin high producing strain	10.759
DRR006521	Root Winter glycyrrhizin high producing strain	16.838
DRR006522	Root Winter glycyrrhizin high producing strain	16.908
DRR006523	Root Summer glycyrrhizin low producing strain	8.993
DRR006524	Root Summer glycyrrhizin low producing strain	8.269
DRR006525	Leaf Summer glycyrrhizin high producing strain	39.311
DRR006526	Leaf Summer glycyrrhizin high producing strain	40.141

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	46.297
SRR2868004	Drought Stress (root)	54.698
SRR2967015	Control (root)	47.789

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	35.883
SRR9715740	Leaf	37.080
SRR9715741	Leaf	53.564
SRR9715739	Root	7.047
SRR9715742	Root	33.970
SRR9715743	Root	36.205

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	24.357
SRR8749028	MeJA induced 9h	66.426
SRR8749029	MeJA induced 9h	12.466
SRR8749030	Uninduced	20.928
SRR8749031	Uninduced	8.602
SRR8749032	Uninduced	3.493

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	38.339
SRR8400027	Control - Root	30.754