Gene detail

Gene detail information of Glyur000609s00035421

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G42170.1	9.00E-93	BED zinc finger ;hAT family dimerisation domain
NR	CAN80126.1	0	hypothetical protein VITISV_013417 [Vitis vinifera]
Swissprot	tr\|P08770\|TRA1_MAIZE	9.00E-119	Putative AC transposase
trEMBL	tr\|A5AJ27\|A5AJ27_VITVI	0	Putative uncharacterized protein {ECO:0000313\|EMBL:CAN80126.1}

Sequence

Transcript Sequence

>Glyur000609s00035421.1
ATGGAAATTGGAAGGCCATTTGCAATTATTGTGGCTCAAAACTTTTGGGGGATGCAAAGCAAGGAACATCACACTTGCGTAGTCACTTCAATTCTTACAAACTTCGAAACAATTCGAGATATAAGGCAAGCTTTTATCAAAACTGAAAAAGTTGGCAATGACACTGTAGTGGTTGGTTCTTATGCATTTAATCAAGATGTAGCAAGGCGTGCAATTTCCAAGATGATAATTCTCCATGAGTATCCTATGGCGATGGTTGAGCACATTGGTTTTAAAGAATTTTGTGCTTCTTTGCAACCTTTATTTAAGGTGGTTTCTCGCAACACTATCAAGAGTGATATCTTGAAAATTTATAAGGATGAGAAAGATAATATGAAGAAGTTGATGAAAAAGATTGAGAGTCGTGTTGCAATTACTATTGATATGTGGACTGCTAGTAACCAAAATAGAGGCTATATGATTGTCACAGCTCACTTTATTGATGATTCATGGACCCTACAAAGTCGACTCTTAAGCAAAACTCTTGGCGATGTCTTGGTTGATTGCTTGATGGAGTGGAATCTGGATAGAAAGTTGTCCACTTTGACTGTTGATAATTGTTCTACAAACAATGCGATGATTGAACATGTTCTAGCTAAGATTTCACGTACGTCATTTATTTTGGGTGGTCAATTGTTTCACATGCGATGCTGTGCTCATATATTGAACTTAATTGTTAAAGATGGTTTGTCCATGATCTCTAATGCCATTGAGAATATTAGAGAGAGTGTTAGCTTTTGGACAGCAACACCTAAAAGAGAGGAGCTATTCATGGAAATAAGTAATCAGTTAGATATTCCATATAATAAGAAACTCATTCTTGATTGCAAGACTAGGTGGAACTCTACTTTTTTAATGCTTCAAGTTGCCATACATTACAAAGAAGTGTTTTCTCGATTGGCACTAATAGAGGAGAAATATGACACCCCACCTAGTGAATTTGATTGGATGATGGCAAAAGAAATTTCTCAAAGGTTGGAAATATTTTATGATGTTACACAATTGTTTTCTGGTACTTTGTATCCAACTGCCAATGTTTATTTTCCAAAAGTATGTGAAATTAAATTGGCTTTGATTGAGTGGCTTGATTGTCCTGATAATGTGATTAAAAAAATGGCTGCAAGCATGATTGCTAAGTTTGACAAGTATTGGAATGTGATCAATAGGGTGATGGCTATAGGCATTGTGTTAGATCCCAGATACAAAGTTGACTTGTTAGAATTTTTTTTTCCTTTGATTTATGGAGAGAAATGTGATGCTGAAATTGAGAAGGTCAAATCTATTTGCCAAGATTTGGTAGCTGAGTATGATATGAAAATCAAGGGTAAGGCAAGTGTTTCTTCATCTTCAAGTCAAAACCAAAATGTAGTAGATGTGGGTGCTGTTGGAAGAAAAGAAGATTGGAGGTCAAATTTTGCAAAGCATGTTAATGCAAAAAAAAGTGTCACAACAAGTTATAAGTCAGAACTTGACCGATATTTGGAGGAGCCAGTGTTACCTGATTCAAATGAAGAGTTTGACATCTTAAATTGGTGGAAGACTAATGGGTTAAAATACCCAATCATGCAAATGATTGCAAGAGATTTCCTTGCAATTCCTATTTCAACTGTTGCTTCTGAGTCTTCATTTAGCACGGGTGGTCGGATTCTTACTCCCCATCGTAGTAGATTGCGTCCAGATACTTTAGAGGCATTGATGTGTGTCCAAGATTGGCTATGGACTGACGTGAAAGGTTCTTCAAAGTCAAAATTCGACAATATTGAATCTAATACAGTATTAGAAGATATTGATGATGACATTGAATCAAGCAGTCAAAGTGATGCTCCTGAAGTGTACTCATCGTCTCCTGAGACTTCATCTGACACTCTGTCAATACGTCTAAAGAACGTAATACGTCTAAAGAACAAGGTCACCCATCTCGAAATTGCTCCAAGTCAAGCACGCTTAACTAGGGAGTTCTTAAGTGATGGGCTACCGAAAAGAAGATGCATCTTGTTGTTCATTCATGTACCCCTTCGCCTAGAAGCCCCCCTTGCTCGTGCCTCTCTGCACCAGCGATCATTCTACGCCCTTGTTGGCCTCAGGGTGTCACATGCCACCAGCTTCTGGCTCTGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00609	20190	26215	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function

GO:0003676 nucleic acid binding

GO:0003677 DNA binding

GO:0046983 protein dimerization activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000609s00035421.1	PF14372.1	DUF4413	349	449	1.00E-29
Glyur000609s00035421.1	PF05699.9	Dimer_Tnp_hAT	502	585	4.60E-33

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.495
SRR1783600	control	0.461
SRR1783602	moderate drought stress	0.777
SRR1811619	moderate drought stress	0.883

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	1.395
DRR006520	Root Summer glycyrrhizin high producing strain	1.688
DRR006521	Root Winter glycyrrhizin high producing strain	0.982
DRR006522	Root Winter glycyrrhizin high producing strain	0.808
DRR006523	Root Summer glycyrrhizin low producing strain	0.083
DRR006524	Root Summer glycyrrhizin low producing strain	0.112
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.578
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.426

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	1.466
SRR2868004	Drought Stress (root)	2.975
SRR2967015	Control (root)	1.579

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	1.126
SRR9715740	Leaf	1.309
SRR9715741	Leaf	1.128
SRR9715739	Root	0.425
SRR9715742	Root	1.172
SRR9715743	Root	0.595

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.000
SRR8749028	MeJA induced 9h	0.000
SRR8749029	MeJA induced 9h	0.002
SRR8749030	Uninduced	0.000
SRR8749031	Uninduced	0.000
SRR8749032	Uninduced	0.000

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	6.330
SRR8400027	Control - Root	6.756