Gene detail

Gene detail information of Glyur000608s00025887.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G14740.2	2.00E-97	carbonic anhydrase 2
NR	KHN00357.1	4.06E-160	Carbonic anhydrase, chloroplastic [Glycine soja]
COG	YP_004113627.1	1.00E-43	carbonate dehydratase [Desulfurispirillum indicum S5]
Swissprot	tr\|P27141\|CAHC_TOBAC	3.00E-127	Carbonic anhydrase, chloroplastic (Precursor)
trEMBL	tr\|G7K1D3\|G7K1D3_MEDTR	2.00E-160	Carbonic anhydrase {ECO:0000256\|RuleBase:RU003956}

Sequence

Transcript Sequence

>Glyur000608s00025887.1
CTGTTTCGTTTCTGCAGCGAGAAAGCTGACCTTGGTGGCGTTGCCGCCGCTAAGATCAAGGAGCTGACGGCGGAGTTAGCGGCGACCGGTTCGAAGCCGTTTAACCCGGATGAGAGGATCCGAACCGGGTTCATCCACTTTAAGAACGAGAAATTCAAGAAGAATCCTGATCTGTATGGCGAACTTGCCAAAGGCCAGAGCCCAAAGTTTATGGTATTTGCATGCTCAGACTCGAGAGTTTGCCCATCCCACATTCTGGATTTCCAGCCGGGCGAAGCATTTGTGGTCCGAAACATCGCCAACATGGTTCCACCATACGACAAGACGAAGTATTCGGGAGCAGGGGCGGCCATTGAATATGCAGTCTTGCATTTAAAGGTGGAGAATATTGTAGTTATTGGACACAGTTGCTGTGGAGGCATAAAGGGGCTCATGTCTATCCCAGATGATGGGACCACTGCAAGGCAAGTCTACCTATGTTATTATTGCTTTGAATTCATAGAGCAATGGGTCCAAATTTGTAATCCCGCAAAGTCCAAGGTTAAAACGGAAACAAGCAGCTTGAGCTTCTCGGAGCAGTGTACTAACTGTGAGAAGGAAGCTGTGAATGTATCGCTTGGGAACCNATTGACTTATCCATTTGTGAGAGATGGGGTTGTGAAGAAAACGCTGGCTTTGAAAGGAGCACATTACAATTTTGTGAACGGCACTTTTGAGCTGTGGGATCTGAACTTCAACCTTTTGCCCTCTGTATCCATTTAATTAGATCTCTCCAGCACCAAAGTAAATTAAACTTGTATGTAGTACATGACGAACATGACTCCTTTTGCAGAGTATTTTGTCTGAGTTTATACACCACCGAGAAAGAAGCAGACATTCAACAAACAAATAATGGTGTGTGAGCAAGTAGCAATAACTCAGTTTTGTTTTCCATCATTCTCCTTTCTCTGCATAATATATATATACAACTTTTTCTTTCTTTCTTTCTTTCATTTTATTTTAATTTCATTTTGCTGATATATCCATGATATGATCCCATGCTAGCTATTAGTATAACTACGTAAGGATTATATGTATGTATGGTTATACATGGCTGGTTATGTATGTATGTCCTATATCCTATGTTTATGACAGCTGTCCTTTTTAGAATTCTCTAGAATTTGGCTAGGTGTCAAAGTTTGTTATTCCTCAGTGTGTGTGATTGAGGATACGTGGTATCTCTGTGAGGTATATATGTAGTGTG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00608	103029	107653	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K01673	cynT, can	EC:4.2.1.1	Nitrogen metabolism	map00910

Gene Ontology

biological_process
GO:0015976 carbon utilization

molecular_function

GO:0004089 carbonate dehydratase activity

GO:0008270 zinc ion binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000608s00025887.1	PF00484.14	Pro_CA	71	237	1.10E-40

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	79.771
SRR1783600	control	81.922
SRR1783602	moderate drought stress	37.698
SRR1811619	moderate drought stress	38.371

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	68.738
DRR006520	Root Summer glycyrrhizin high producing strain	71.345
DRR006521	Root Winter glycyrrhizin high producing strain	24.652
DRR006522	Root Winter glycyrrhizin high producing strain	23.736
DRR006523	Root Summer glycyrrhizin low producing strain	69.821
DRR006524	Root Summer glycyrrhizin low producing strain	68.628
DRR006525	Leaf Summer glycyrrhizin high producing strain	213.692
DRR006526	Leaf Summer glycyrrhizin high producing strain	211.952

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	120.883
SRR2868004	Drought Stress (root)	157.774
SRR2967015	Control (root)	102.537

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	433.366
SRR9715740	Leaf	434.503
SRR9715741	Leaf	377.480
SRR9715739	Root	46.616
SRR9715742	Root	98.132
SRR9715743	Root	80.732

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	316.662
SRR8749028	MeJA induced 9h	297.219
SRR8749029	MeJA induced 9h	481.393
SRR8749030	Uninduced	650.273
SRR8749031	Uninduced	588.759
SRR8749032	Uninduced	332.201

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	86.633
SRR8400027	Control - Root	100.086