Gene detail information of Glyur000608s00025883 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G70370.2 | 0 | polygalacturonase 2 |
| NR | XP_004514684.1 | 0 | PREDICTED: polygalacturonase-1 non-catalytic subunit beta-like isoform X1 [Cicer arietinum] |
| Swissprot | tr|P92990|JP650_ARATH | 0 | Probable polygalacturonase non-catalytic subunit JP650 (Precursor) |
| trEMBL | tr|I1JC23|I1JC23_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA02G03960.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00608 | 58716 | 61743 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000608s00025883.1 | PF03181.10 | BURP | 412 | 626 | 7.00E-68 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 77.717 |
| SRR1783600 | control | 78.050 |
| SRR1783602 | moderate drought stress | 32.384 |
| SRR1811619 | moderate drought stress | 32.341 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 79.436 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 78.188 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 4.877 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 4.715 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 52.738 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 53.106 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 21.274 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 21.056 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 38.268 |
| SRR2868004 | Drought Stress (root) | 32.351 |
| SRR2967015 | Control (root) | 29.283 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 39.692 |
| SRR9715740 | Leaf | 3.767 |
| SRR9715741 | Leaf | 10.556 |
| SRR9715739 | Root | 43.844 |
| SRR9715742 | Root | 138.743 |
| SRR9715743 | Root | 115.497 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 4.522 |
| SRR8749028 | MeJA induced 9h | 3.384 |
| SRR8749029 | MeJA induced 9h | 2.521 |
| SRR8749030 | Uninduced | 0.216 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.107 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 60.778 |
| SRR8400027 | Control - Root | 81.989 |