Gene detail

Gene detail information of Glyur000608s00025880

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G23790.1	1.00E-143	Plant protein of unknown function (DUF936)
NR	XP_004489846.1	0	PREDICTED: uncharacterized protein LOC101502190 isoform X1 [Cicer arietinum]
trEMBL	tr\|G7K1E3\|G7K1E3_MEDTR	0	DUF936 family protein {ECO:0000313\|EMBL:AES96196.1}

Sequence

Transcript Sequence

>Glyur000608s00025880.1
ATGGCAACTCTCGCACCTGGAATTCTATTGAAGCTCCTAAACGGCTTGAGCACGGGCGTGAAACCCACGAGCGAGCACCGGAGCTCCCTGTTGCAGGTCACCGATATAGTCCCCGCCGACCTCGACGAGAAAAGCCTGTTCCCAAAACAAGGCTTTTACATCAAAGTCTCCGATTCATCGCACTCCATCTACGTGTCCCTTCCCTCTGACCAAGACGACGTCGTCCTCAGTAACAAGATGCAACTGGGCCAGTTCATCTACGTGGACAAGTTGGAACCCGGTTCACCGGTTCCCATCCTCAAGGGTGCTAAACCACTCCCCGGTAGACACCCTCTTGTAGGAACCCCTGAACCCTTAATGGGCCTCAGAGACAGAACACAACAACAACAACAACAACAACAACAACAACCACCACCCAGTTCAGTTTCAGTACCAAGAAGAGGTTCTTGGGGAACAGGGAAGAGTGTTAGTTTTGACGTGTCTTCTTCTCCCTGTGTTTTCAAGCCGGTTAATTTGGACTTTGATCAGTGTACACCTGTGAAAGACCGTGTTACTATTTCTTCTTCGCCCTTTTCGATTAGAGGGAGGGTTGCGAAGGACGGAATAACTACTCCTATTAGATGCTCTGTTGGTGGAGGGCTTCTGGCTAAGATGACCGATGCTAAGGGAGAAAGTAGTACTCCTGCATTGCTTAGGAAAAGCTGTGTTGTGGCCTCTTCCAATTCGAAAATTTCCAGGAGCAGGAGTCAGGAAAAGAAAGGTGGCACTCCACCACCGCGGTTGAGAAATGCAAGAGCGGCAACTTCTTCCAACAGTGTTGCTGNAGGGGATGCTCACAACCCGGACTCAAATGCCACTTCTTCTCAACAGAAATCTCAGTCTACTACTAATTCAGCTTTTGATGATTGCAACAATCTTAGCCTCCCCATGAATTTACCCGGAAAGCTGAGTTCGTTGGGGAAGGAAGCTGTGCAGCAAAGAGAAGTGGCTCAAAAGATTGCCCTTCAAGCATTAAGAGCTGCTTCAGCTACTGAGGCAGTAGTTCGGTCCCTGAAGATGTTCTCAAATTTATGCAGATCAGCTCGAGCTGATGCTCCTGCTTCCTGTTTTGAACGGTTTTTGGAATTCCATAACGACATTGNACAAGCAGTTAGTGAAATGATGTCTATTCAAGCAGCTACTTCAGCTTCAGAATTGGCTCAGAAAACAGATAAACAAGCTGAAGAGGAACAACCACAGGTTTTAAATGAAGTTATGCAGAATTCAATGGACCAATCAGGGAACTCTGAATCAAACATGTCAAAAAGAAGGGGTGCTTTGCACAAAACCAATATGGGGAAGCTGCTCCTGAGATCGGGTTCAAACCAAAAGGAGATTTTGGAGAAGAAAGGTTCTAGTACTACTACNACTACGCTTACAAAATTGCCACTGGAACCTATTGTTGAGAATGACGAGAACAAGAAACCAGCATCATCATCATGCAGTAGCTTAAGCAACACAATCAAACTGGGGAAGCAGATTGAAACAGAAGCTGGGAATTGGTTTATGGAGTTCATTGAGAAGGCCTTGGAAGCTGGTTTGAAGAAAACAAAGGAAGCATCAGGTGGGGATGTTCGGAAAGTTCCTCAGTCTCTCATACTAAAAGTNATGAACTGGGTTGAGGTAGAACAGTACCACAGTAACAAACGGCCTAGCCATCCTAAAGCAGCACAGATTGCTCGGAAGTTAAGAATAAAGATTAAAAATCCTTGATGCTTTTTTGTTCAATTGATGGAATGAAGTTTCA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00608	43793	46221	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

Not hits found.

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000608s00025880.1	PF06075.7	DUF936	4	572	9.90E-134

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	3.579
SRR1783600	control	3.610
SRR1783602	moderate drought stress	3.169
SRR1811619	moderate drought stress	3.536

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	6.929
DRR006520	Root Summer glycyrrhizin high producing strain	7.148
DRR006521	Root Winter glycyrrhizin high producing strain	0.782
DRR006522	Root Winter glycyrrhizin high producing strain	0.585
DRR006523	Root Summer glycyrrhizin low producing strain	1.093
DRR006524	Root Summer glycyrrhizin low producing strain	1.224
DRR006525	Leaf Summer glycyrrhizin high producing strain	1.745
DRR006526	Leaf Summer glycyrrhizin high producing strain	1.769

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	13.560
SRR2868004	Drought Stress (root)	5.599
SRR2967015	Control (root)	6.235

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	4.017
SRR9715740	Leaf	0.463
SRR9715741	Leaf	0.696
SRR9715739	Root	0.788
SRR9715742	Root	2.589
SRR9715743	Root	2.098

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	19.671
SRR8749028	MeJA induced 9h	10.049
SRR8749029	MeJA induced 9h	10.702
SRR8749030	Uninduced	0.214
SRR8749031	Uninduced	0.459
SRR8749032	Uninduced	0.455

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	12.812
SRR8400027	Control - Root	9.498