Gene detail

Gene detail information of Glyur000608s00025879

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G40270.1	5.00E-161	HD domain-containing metal-dependent phosphohydrolase family protein
NR	XP_004489848.1	0	PREDICTED: protein SAMHD1 homolog [Cicer arietinum]
COG	NP_579558.1	8.00E-32	nucleotidyltransferase [Pyrococcus furiosus DSM 3638]
trEMBL	tr\|G7K1E7\|G7K1E7_MEDTR	0	Metal-dependent phosphohydrolase {ECO:0000313\|EMBL:AES96200.2}

Sequence

Transcript Sequence

>Glyur000608s00025879.1
ATGGCACTTCCTGTTTCCGCGAACGAGTCCGTCTCGCGCGAAAGGAAATTCCTGAAGCACATTCGCGACAACGTTCACGGCAACATCTTCCTTGAGCCTATCTTCTTGAAACTTCGTGATTTGAAGCAACTTGGCCTAAGCCATATGGTGTACCCGGGGGCGGTGCACTCTCGTTTTGAGCATTCACTGGGTGTTTACTGGCTGGCTGGCAAAGCTATTGATGTCATTAAAAAATACCAAGGCCCGGAGCTTGGTATTGAACATTCTGATGTATTGGCAGTAAAACTTGCTGGATTACTACATGATGTTGGTCATGGGCCCTTCAGCCACACGTTTGAGCGTGGATTCCTTCCCCTGGTTCTTAATGGCTCCACTTGGTCTCATGAGGAAATGTCTGTGAAGATGATAGATCACATTGTTGATCAACACAATATTGATTTGGATCNTGAACTCCTAAAAAAAGTGAAGGAAATGATCACTTCTAGCTCTGACCATCCTTCACAAAGAGAAAACAAGTTCTTGTATGATATTGTTGCAAATGGTCGCAATGGAATTGATGTTGACAAGTTTGACTACATTGTTCGTGATTCCCGTGCTTGTGGCCTGGGATGCAACTTTCAACCTGAGAGATTGATGGAGACCATGCAAGTTATGGATGACGAAATTTGTTATCCTGCTAAAGATTATCTGACAATTCACAAGTTATTTGCAACCCGTGCTGATTTGCATCGAACAGTTTATACACATGCAAAAGTAAAGGCAATAGAATTGATGGTAATCGATGCACTGTTAAATGACTCAATTCTTAAAACAATTGAATCTTCTTCCCAGAAAGAATTGAAGGAATCCAGAGACTTGATCCTACGCATTCACAGAAGGGATCTGTACCAGTTTTGCAATGAATTTTCTGTTCCAAAGGAAAGACTAGACCACTTCAGAGCCGTCACACCACAAGATATTGTTTGTTCCCAGACAAATGGTATCACTTTGAAAGAAGAAGATGTCGCTGTGAGCAATGTTAAAATTGATTTAACACGAGGAAGGGAAAACCCTCTTGAAAGTAAAGAAAAATTTTCCATCCAAGACGACCGCATCAGTCATTTGTTGCCAGCATTTTACGAAGACGTCATAGTGAGAGTATACAGTAAGAAGCCTGAACTGGTGGAAGCTGTTTCTACCGCCTTCGAAAATTATCAGCTCAAGACATTCGGAAGGAAAACACAGGTGCACGAAACTCCTGAGAAGAAGAAACACCTCAAGCGTAAGACCCACTGTACTGACCGGAAGCTGGTAAATATCTACTAGTCCGTTCGCCGTGAGCGGATCACACGTCAGGACCCAATNGAAAGAAAATATAGTAGTTTATATCCTGCATTTTACGCTGGGTAGTCCGGACTCTGGAGCCCCTTCAATGGAAACTTTCCACATACCTAAATCAATTATTTTGTGCTTCAGCGCTGACGGATGCCTCTTACTGGATATTTTGCTACTAGGACAGAAACTTCAGATCTAGGGTGCCGTCTCGTCTAGGCTATGACAACCTAAAAAAATCCCACCAATTGGAAAGCCCTTTTCACCACAGATATATAGGTTTTCTTACCCAAATGGTGTCACATGTGGTAGATTTT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00608	36127	42603	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

Not hits found.

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000608s00025879.1	PF01966.17	HD	58	193	2.70E-13

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	2.211
SRR1783600	control	2.042
SRR1783602	moderate drought stress	1.920
SRR1811619	moderate drought stress	1.958

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	2.764
DRR006520	Root Summer glycyrrhizin high producing strain	2.395
DRR006521	Root Winter glycyrrhizin high producing strain	2.244
DRR006522	Root Winter glycyrrhizin high producing strain	2.321
DRR006523	Root Summer glycyrrhizin low producing strain	1.662
DRR006524	Root Summer glycyrrhizin low producing strain	1.459
DRR006525	Leaf Summer glycyrrhizin high producing strain	6.663
DRR006526	Leaf Summer glycyrrhizin high producing strain	6.602

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	0.870
SRR2868004	Drought Stress (root)	0.726
SRR2967015	Control (root)	0.682

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.893
SRR9715740	Leaf	0.714
SRR9715741	Leaf	0.526
SRR9715739	Root	0.259
SRR9715742	Root	0.962
SRR9715743	Root	0.640

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	4.793
SRR8749028	MeJA induced 9h	1.416
SRR8749029	MeJA induced 9h	1.198
SRR8749030	Uninduced	1.022
SRR8749031	Uninduced	0.514
SRR8749032	Uninduced	0.557

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	1.149
SRR8400027	Control - Root	1.227