Gene detail

Gene detail information of Glyur000608s00025873.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G23820.1	2.00E-152	spermidine synthase 1
NR	XP_003613246.1	0	Spermidine synthase [Medicago truncatula]
COG	YP_006760780.1	3.00E-95	spermidine synthase SpeE2 [Desulfobacula toluolica Tol2]
Swissprot	tr\|Q9ZTR1\|SPD1_PEA	0	Spermidine synthase 1
trEMBL	tr\|G7K1F1\|G7K1F1_MEDTR	0	Spermidine synthase {ECO:0000313\|EMBL:AES96204.1}

Sequence

Transcript Sequence

>Glyur000608s00025873.1
CATTTATAAAACATGTCTACACAAGTACACATCTCGGAGTATAATAATTAAACTAAGTTGATATATTTATCTTATCTTAATTTTTTACATATTGATGAATGATGAGTAGAGCATGATTGAAAAATAAATGAATCCTCCGTGAGCGTGTGTGTGAGAGACTGTGAGAGTATATAAACCGTAGAAAAGGGTGAAGGGCAAAGAGTGCGTGACTTCCCTACTCAGTTGCAAAGATGGCGGCAGAGAACGCAGTTGAGTCCACAGATTTCCCCATGAAGAGGCAAAGGGAAGAAGACGGAGAAAATGGGGTCTCTCAGAATATTGCTTCTACCGTCTCAAAGGACCAACCTCAGCCCAATGGTTTATCAGCTGTTATCCCTGGCTGGTTCTCTGAAATCAGCCCAATGTGGCCTGGGGAGGCACACTCCTTGAAAGTGGAAAAGATTTTGTTTCAAGGAAAGTCTGATTATCAGGATGTCATGGTCTTTCAGTCGTCAACATATGGCAAGGTTCTTGTTTTGGATGGAGTCATTCAGCTCACAGAAAGGGATGAGTGTGCCTACCAAGAGATGATCACTCACCTTCCTCTTTGCTCTATTCCAAATCCCAAAAAGGTTTTGGTTATTGGTGGAGGNGATGGTGGAGTCCTGCGGGAAGTATCACGCCATTCTTCAGTAGAAAAGATAGACATTTGCGAAATAGACAAGATGGTCGTCGATGTCTCCAAACAATTTTTCCCCGAGATAGCAGTAGGTTTTGACGATCCACGTGTTACACTTCATATCGGTGATGGAGTTGCATTTTTGAAGGCCGTTCCAGAAGGAACTTATGATGCAGTTATAGTGGATTCATCTGATCCTNTTGGTCCTGCTCAAGAGCTTTTTGAGAAGCCTTTTTTTGCGTCNGTTGCAAAGGCTCTTCGTCCAGGTGGAGTTGTGTGTACTCAGGCAGAAAGTATATGGCTCCACATGCATATCATTGAGGACATTGTAGTGAATTGTCGCCAGATATTCAAAGGTTCTGTCAACTATGCTTGGACAACGGTTCCTACATACCCAAGTGGGATGATTGGTTTTATGCTTTGCTCAACCGAGGGGCCTCCCGTCGATTTCAAGCATCCAGTGAATCCTATAGATGAAAATGATAGTCAGCAATCAGCAAGGCCATTGAAATTTTACAACTCTGAGATTCATTCAGCTGCTTTCTGTTTGCCATCTTTTGCTAAGAGGGCAATTAGTTCTAAAGCAGCAAATTGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00608	6968	11098	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K00797	speE, SRM	EC:2.5.1.16	Cysteine and methionine metabolism	map00270
			Arginine and proline metabolism	map00330
			beta-Alanine metabolism	map00410
			Glutathione metabolism	map00480

Gene Ontology

biological_process
GO:0006595 polyamine metabolic process

molecular_function
GO:0003824 catalytic activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000608s00025873.1	PF01564.12	Spermine_synth	50	294	4.50E-99

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	34.946
SRR1783600	control	35.362
SRR1783602	moderate drought stress	27.416
SRR1811619	moderate drought stress	27.019

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	60.130
DRR006520	Root Summer glycyrrhizin high producing strain	59.204
DRR006521	Root Winter glycyrrhizin high producing strain	23.026
DRR006522	Root Winter glycyrrhizin high producing strain	22.103
DRR006523	Root Summer glycyrrhizin low producing strain	47.914
DRR006524	Root Summer glycyrrhizin low producing strain	48.087
DRR006525	Leaf Summer glycyrrhizin high producing strain	31.621
DRR006526	Leaf Summer glycyrrhizin high producing strain	31.032

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	126.417
SRR2868004	Drought Stress (root)	85.371
SRR2967015	Control (root)	75.147

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	54.048
SRR9715740	Leaf	61.384
SRR9715741	Leaf	56.885
SRR9715739	Root	62.365
SRR9715742	Root	55.787
SRR9715743	Root	57.758

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	62.993
SRR8749028	MeJA induced 9h	32.317
SRR8749029	MeJA induced 9h	45.207
SRR8749030	Uninduced	17.364
SRR8749031	Uninduced	6.984
SRR8749032	Uninduced	11.066

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	85.740
SRR8400027	Control - Root	74.589