Gene detail

Gene detail information of Glyur000607s00021620

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G52820.1	8.00E-34	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein
NR	XP_004498637.1	4.01E-102	PREDICTED: gibberellin 3-beta-dioxygenase 3-like [Cicer arietinum]
COG	YP_553500.1	7.00E-16	putative oxidoreductase [Burkholderia xenovorans LB400]
Swissprot	tr\|Q945B6\|AOP1L_ARATH	1.00E-36	Probable 2-oxoglutarate-dependent dioxygenase AOP1.2
trEMBL	tr\|I3SQC5\|I3SQC5_LOTJA	5.00E-96	Uncharacterized protein {ECO:0000313\|EMBL:AFK42467.1}

Sequence

Transcript Sequence

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00607	115784	116774	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0055114 oxidation-reduction process

molecular_function

GO:0016491 oxidoreductase activity

GO:0016706 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000607s00021620.1	PF03171.15	2OG-FeII_Oxy	45	144	7.80E-18

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.616
SRR1783600	control	0.563
SRR1783602	moderate drought stress	0.259
SRR1811619	moderate drought stress	0.194

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.000
DRR006520	Root Summer glycyrrhizin high producing strain	0.000
DRR006521	Root Winter glycyrrhizin high producing strain	0.000
DRR006522	Root Winter glycyrrhizin high producing strain	0.000
DRR006523	Root Summer glycyrrhizin low producing strain	0.000
DRR006524	Root Summer glycyrrhizin low producing strain	0.186
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.156
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.156

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	8.020
SRR2868004	Drought Stress (root)	4.030
SRR2967015	Control (root)	3.736

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.003
SRR9715740	Leaf	0.054
SRR9715741	Leaf	0.000
SRR9715739	Root	0.066
SRR9715742	Root	0.412
SRR9715743	Root	0.623

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	237.423
SRR8749028	MeJA induced 9h	161.951
SRR8749029	MeJA induced 9h	192.818
SRR8749030	Uninduced	47.694
SRR8749031	Uninduced	26.157
SRR8749032	Uninduced	34.382

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	8.050
SRR8400027	Control - Root	7.609