Gene detail

Gene detail information of Glyur000607s00021618.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G15550.1	5.00E-84	gibberellin 3-oxidase 1
NR	ABI64150.1	0	gibberellin 3-oxidase [Pisum sativum]
COG	YP_007565700.1	3.00E-28	putative oxidoreductase [Ilumatobacter coccineus YM16-304]
Swissprot	tr\|O24648\|G3OX_PEA	4.00E-117	Gibberellin 3-beta-dioxygenase 1
trEMBL	tr\|B2BA73\|B2BA73_PEA	0	Gibberellin 3-oxidase {ECO:0000313\|EMBL:ABI64150.1}

Sequence

Transcript Sequence

>Glyur000607s00021618.1
CTTCTTTTGTCTTACTCAACCATATTCGTCCAAAATCCCAAATCCGACACTACAAAGTCCAATGGCCAACCTTCACCCATCTGTATCGTTTTAACCTAATCTCTTTATACTTCATATTCTCATAATATTTATATACTTAGGTTCTAATCAACCAACCACACAAACACAACTACCCTTCAGTAATTATTTCACTTTGAAAATATGGCTACTACTCTCTCTGAAGCCCATAGAGACCACCCTCTCCACCTCCATCATATTATCCCCTTAGACTTTTCTTCACTTAGAACCTTACCTGATTCCCATGCATGGCCTCAGTCTGATGATGNCGACGACGATTTCTCATCCAATGATGGATCATCCATACCCATGATTGACCTCATGGATCCTAATGCCATGGAACACATAGGCCTTGCATGTGAGAAGTGGGGTGCCTTCCAATTGAAGAACCATGGCATACCCTTGAATGTTATTGAAGAGGTTGAAGAAGAGGCAAAGAGGCTCTTCTCTCTCCCCTCACAGGATAAGCTTAAGGCCTTGAGATCCGCCGGCGGCNCCACCGGATACGGAAGGGCTCGGATATCGCCGTTCTTCCCGAAGTACATGTGGCATGAAGGATTCACAATCATGGGGTCTCCATCGGATGATGCCAAAAAGATCTGGCCTAATGACTACAAACGATTTTGTGACATAATGGAGGACTACCAGAAGCGAATGAGGGTGCTAGCAGAGAAACTAACCCACNTGATGTTCACCTTGTTGGGAATCTCGGAGCAAGAAGCGAAATGGGTCGGTTCAAGCAACCACTGCGGAGCGGTTCAGCTGAACTTCTACCCATGTTGTCCCGACCCGAACCGAGCCATGGGTCTGGCCCCACACACCGACACATCCCTCCTCACAATCCTCCACCAAAGCCAAACCAGTGGACTCCAAATCTTCAAAGAAGGTACTGCAGGTGCAGGGTGGGTTACGGTGCACCCTCACCCGAACACACTCGTCGTAAACACCGGTGACATGCTACATATATTGTCGAACTCGAGGTTCCGGTGTGCTCTACACCGTGTCACTGTCAACGACACGAGGCATAGATACTCTGTGGCCTATTTCTATGGGCCCCCAGTGGATTATGTGCTCTCTCCTAATTTGGTTCTCAATAATAATAATAATAATAACGATGTGGCGGCTCGCTTCCGTGCTTTGACCGTGAAGGAGTATATTGGCATTAAGGCCAAGAATCTTGGGGGAGCATTGTCTTTGATTAGTACTACACGTAATTAATGACTAGCTAATGTCAATATGAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00607	106476	109198	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K04124	E1.14.11.15	EC:1.14.11.15	Diterpenoid biosynthesis	map00904

Gene Ontology

biological_process
GO:0055114 oxidation-reduction process

molecular_function

GO:0016491 oxidoreductase activity

GO:0016706 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000607s00021618.1	PF14226.1	DIOX_N	54	155	2.60E-22
Glyur000607s00021618.1	PF03171.15	2OG-FeII_Oxy	205	304	9.60E-25

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.425
SRR1783600	control	0.419
SRR1783602	moderate drought stress	0.557
SRR1811619	moderate drought stress	0.589

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.083
DRR006520	Root Summer glycyrrhizin high producing strain	0.082
DRR006521	Root Winter glycyrrhizin high producing strain	20.654
DRR006522	Root Winter glycyrrhizin high producing strain	20.268
DRR006523	Root Summer glycyrrhizin low producing strain	0.766
DRR006524	Root Summer glycyrrhizin low producing strain	0.747
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.000
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.000

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	4.733
SRR2868004	Drought Stress (root)	1.933
SRR2967015	Control (root)	1.444

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.079
SRR9715740	Leaf	0.000
SRR9715741	Leaf	0.096
SRR9715739	Root	0.375
SRR9715742	Root	0.190
SRR9715743	Root	0.071

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.055
SRR8749028	MeJA induced 9h	0.176
SRR8749029	MeJA induced 9h	0.439
SRR8749030	Uninduced	10.587
SRR8749031	Uninduced	12.106
SRR8749032	Uninduced	17.428

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	0.392
SRR8400027	Control - Root	0.121