Gene detail

Gene detail information of Glyur000607s00021613

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G11300.1	4.00E-118	mitotic-like cyclin 3B from Arabidopsis
NR	XP_006596120.1	0	PREDICTED: cyclin-A2-2-like isoform X1 [Glycine max]
Swissprot	tr\|Q147G5\|CCA22_ARATH	3.00E-147	Cyclin-A2-2
trEMBL	tr\|K7M6F5\|K7M6F5_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA14G16130.2}

Sequence

Transcript Sequence

>Glyur000607s00021613.1
ATGAAGAAAGAGAATGCTGCAGTTGGTGTTGGTGTTGGTGGTGGTGGTGGTGTGCGGGTGACGCGAGCAAGGGCTAGAGCATTGGAAGGGGTATCTGCGTCTTCAAGACGTTGTTTCAAAAAGGAACACAAAAACGGAGTAGATTTTGGACTAAGCTCCAACACAGCTTCTCTTGCTGTNGACCCTGTCAAGAAGAGCACCGCGGTGCTAACAGATACAAGAGGAGGTTACAAGAAGAGAAACACAAAGGAAGCTTCAGATCACGTCTCCATACAAGTTTTGTCAACCCAAGAGGATGTTGGAACGACGGAAGAGTCACGTGATAGNGAGCTACTGCAACCTTGTACGTCCAATAGCACGAGAGAACGTGTTATAGAAGCTCCCCTGCTTTCAATGCAGGACTCTGTGATGTCTGATGAACTCCTGAGCTCTCCAAATAAAGACATAAATATGATATGTGGGAAACTAAGAGCCTCGGATGGCTTGGGAATTGTAGATATTGATTCAGAGTTAAAGGATCCTCTAGTTTGGAGTTCATATGCCCCTGATATATACCATAGTATACGTGTCAGAGAGTGTGAAAGGAGACCGTTAGCCAATTACATAGAAAAGTTGCAGCAAGAGATCACTCCGAGCATGCGGGCAATTCTGGTTGATTGGCTTGTGGAGGTTTCTGAGGAATATAAACTAGTTCCAGACACTCTTTACCTTACAGTGAATCTCATTGATCGGTTTCTCTCCAGAAGCTTGATTAAAAAACAAAGGCTCCAGTTGCTTGGTGTTACTAGCATGCTGATTGCATCTAAGTATGAAGAGATTTGTGCTCCTCGAGTGGAAGAATTTTGCTTCATCACCGATAATACATACACCAAAGCAGAGGTGTTGAAAATGGAGAGAGAGGTTCTAAATCTTTTGCATTTTCAATTATCTGTTCCCACAACCAAAACATTTCTCAGGAGGTTCATCCAAGCAGCACAATCTTCTTACAAGGTTCTTTCTGTTGAACTGGAATTCCTGGCAAATTATTTAGCAGAGCTTACTCTTGTTGAATACAGCTTCTTGCAGTTTCTACCCTCCCTCACAGCTGCATCTGCTGTATTACTAGCCAGATGGACCCTCAACCAGTCAGAACATCCATGGAATCCAACTCTAGAGCACTATACAAATTACAAAGTGTCAGAGCTTAAAACCACTGTCCTTGCACTGGCAGATTTGCAACTCAATACCAAAGGATGTTGTCTGAATGCTGTACGTGAAAAATATAAACAACAGAAGTTCAATAGTGTGGCAAATTTGTCTCCAAAACCGGTGGAGTCACTTTTCCAAGTTCAAGTGTAAATGCTGCATCTCCAAANACCAAAGAATGACCTTAGGAATTTCTGATGCTACATACATGGAAGGTGATATTATCCTTTGCTGTAATTATTTTACCATCTAATTTTGTTGTGATTAATTCCCAATTACAGTCAATTCCGTAGTTGTGACTTGTGGGATGGCACCTTCCAGATCTCCTT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00607	77132	81589	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

cellular_component
GO:0005634 nucleus

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000607s00021613.1	PF00134.18	Cyclin_N	183	309	2.30E-45
Glyur000607s00021613.1	PF02984.14	Cyclin_C	312	434	1.10E-32

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.890
SRR1783600	control	0.803
SRR1783602	moderate drought stress	0.464
SRR1811619	moderate drought stress	0.439

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.869
DRR006520	Root Summer glycyrrhizin high producing strain	1.259
DRR006521	Root Winter glycyrrhizin high producing strain	0.028
DRR006522	Root Winter glycyrrhizin high producing strain	0.054
DRR006523	Root Summer glycyrrhizin low producing strain	0.517
DRR006524	Root Summer glycyrrhizin low producing strain	0.528
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.610
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.599

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	5.880
SRR2868004	Drought Stress (root)	2.209
SRR2967015	Control (root)	2.087

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	1.276
SRR9715740	Leaf	0.020
SRR9715741	Leaf	0.667
SRR9715739	Root	0.065
SRR9715742	Root	0.306
SRR9715743	Root	0.730

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	4.298
SRR8749028	MeJA induced 9h	3.943
SRR8749029	MeJA induced 9h	3.096
SRR8749030	Uninduced	0.144
SRR8749031	Uninduced	0.041
SRR8749032	Uninduced	0.291

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	4.583
SRR8400027	Control - Root	2.930