Gene detail information of Glyur000607s00021608 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G25660.1 | 0 | embryo defective 2410 |
| NR | XP_006596123.1 | 0 | PREDICTED: uncharacterized protein LOC100779257 [Glycine max] |
| COG | YP_007126253.1 | 2.00E-36 | protein of unknown function DUF490 [Gloeocapsa sp. PCC 7428] |
| trEMBL | tr|A0A072VNV3|A0A072VNV3_MEDTR | 0 | Embryo defective 2410 protein {ECO:0000313|EMBL:KEH39815.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00607 | 44151 | 60396 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000607s00021608.1 | PF04357.8 | DUF490 | 1730 | 2133 | 2.90E-28 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 5.897 |
| SRR1783600 | control | 5.928 |
| SRR1783602 | moderate drought stress | 8.057 |
| SRR1811619 | moderate drought stress | 8.046 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 6.991 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 6.873 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 5.735 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 5.582 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 8.768 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 8.823 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 7.806 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 7.832 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 17.171 |
| SRR2868004 | Drought Stress (root) | 20.247 |
| SRR2967015 | Control (root) | 19.446 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 15.516 |
| SRR9715740 | Leaf | 16.567 |
| SRR9715741 | Leaf | 17.779 |
| SRR9715739 | Root | 1.928 |
| SRR9715742 | Root | 17.863 |
| SRR9715743 | Root | 15.029 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 6.196 |
| SRR8749028 | MeJA induced 9h | 8.343 |
| SRR8749029 | MeJA induced 9h | 3.533 |
| SRR8749030 | Uninduced | 4.259 |
| SRR8749031 | Uninduced | 2.889 |
| SRR8749032 | Uninduced | 3.244 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 17.789 |
| SRR8400027 | Control - Root | 19.480 |