Gene detail

Gene detail information of Glyur000606s00017356.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G20030.1	7.00E-62	RING/U-box superfamily protein
NR	XP_006581445.1	4.55E-170	PREDICTED: putative RING-H2 finger protein ATL12-like [Glycine max]
Swissprot	tr\|Q9SL78\|ATL12_ARATH	1.00E-78	Putative RING-H2 finger protein ATL12 (Precursor)
trEMBL	tr\|I1K9D1\|I1K9D1_SOYBN	2.00E-170	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA06G08930.1}

Sequence

Transcript Sequence

>Glyur000606s00017356.1
ATGTGTTTGTGTAGTGATATCCCTTACCTCTATAAGAACCGTTTGCTAATGGTCATTATGGTTCTTTCTCTACTCTCCAACAACAACGTTGGAGGCCAAGACATAGAAAAACAGAACATGGCAGAATTGCCCGAAACTGTTACTCCAAGCAAAGGGGTTGTAATAGTAGTCCTCTCCATAATGATTGCCATAGCGTTTCTCTTACTTGCCTACGTGAGGTTCTGTCGTGTTAGCCCTCTTCAACTTCTGAACCAGAACCCCAGAAACACACAAGGGCTAATAACTCGATCAAGGTCTATATTTTCTGGGATTGACAAACAAGTCATTGAAACACTCCCAATCTTCAAGTTTTCTTCCCTCAAGGGATCCAAAGAAGGCCTTGAATGCACTGTTTGCCTATCCAGATTCGAGGACGCAGAGATTCTCAGGCTGCTGCCAAAGTGCAAACATGCTTTCCACATGAGTTGCATTGACAAGTGGCTTGAAAACCACTCTACCTGCCCTCTCTGCAGGTACAGGGTTGAAGCAGTGGACATCAAGAACTTCACTTTATCACTGAGCTCAAGGTTCCTGCGAGTCCCTTCGAATCTAAATGAGGACCCAAATCTTGAAATCTTCATCCAGAGGGAGCCATCATCCCATCGAGGGTCGTCAAGAAGAAAGATCAAGAAAGAAGAACTGCTTCTTGATCAAGAAGGTGGCAATAGCAGTGGTGGGGGTGGGGGCACTGAGTGGAAACCTGTGCATATGATCAATCACAGAATAGTCATCTCTGATGTTGTTACCAGGAGCAGGTGGAGTGATCTTAATTCTTCAGACCTGTTATCCTTGAACTGTGAGATGCTCAATGATATGTGCAGCAATAGATTCTCTCCTTTGGAATCCACCAAGGGTGAGAACTTTGGTGGGATTTCAAGCCTCCCCTCTACTTCTTTATCCAATGATGAGGAAGAAAATTCATTTACGGCACTGAATCCTGCTGAGAAGAGGTCCATGTCTGAGATTGCCAATTTTCCAAGGTTTGCGGAAATCAGCAGAAGGAATAGGATCAGAGAATGTGGTGGAGACAATGGAAGCGAAGAGAGGTTGTGGAGGATTTGGTTGCCAATTGCACGAAGAACGGTTCAATGGTTTGCAAGACAAGAAAGAAACTCGGTTGAATTGGAACACAAGCCTTTAGCTTCAAACGTTTGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00606	137544	138737	-

Gene family

Gene family	subfamily
Ubiquitin Family	RING

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function

GO:0005515 protein binding

GO:0008270 zinc ion binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000606s00017356.1	PF13639.1	zf-RING_2	128	171	4.50E-15

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	17.377
SRR1783600	control	17.289
SRR1783602	moderate drought stress	18.205
SRR1811619	moderate drought stress	18.389

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	9.833
DRR006520	Root Summer glycyrrhizin high producing strain	9.576
DRR006521	Root Winter glycyrrhizin high producing strain	0.093
DRR006522	Root Winter glycyrrhizin high producing strain	0.091
DRR006523	Root Summer glycyrrhizin low producing strain	1.204
DRR006524	Root Summer glycyrrhizin low producing strain	1.507
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.735
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.854

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	13.959
SRR2868004	Drought Stress (root)	22.162
SRR2967015	Control (root)	18.807

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	1.115
SRR9715740	Leaf	1.604
SRR9715741	Leaf	2.165
SRR9715739	Root	2.375
SRR9715742	Root	11.036
SRR9715743	Root	9.113

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.366
SRR8749028	MeJA induced 9h	0.773
SRR8749029	MeJA induced 9h	0.563
SRR8749030	Uninduced	0.636
SRR8749031	Uninduced	0.367
SRR8749032	Uninduced	0.315

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	27.729
SRR8400027	Control - Root	19.192