Gene detail information of Glyur000606s00017352 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G22810.1 | 8.00E-35 | Plant protein of unknown function (DUF828) with plant pleckstrin homology-like region |
| NR | XP_006578226.1 | 2.25E-170 | PREDICTED: uncharacterized protein LOC100814154 isoform X2 [Glycine max] |
| trEMBL | tr|K7KIW2|K7KIW2_SOYBN | 2.00E-169 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA04G08810.2} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00606 | 127267 | 130234 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000606s00017352.1 | PF05703.6 | Auxin_canalis | 36 | 260 | 3.00E-59 |
| Glyur000606s00017352.1 | PF08458.5 | PH_2 | 329 | 358 | 3.20E-05 |
| Glyur000606s00017352.2 | PF05703.6 | Auxin_canalis | 36 | 237 | 1.70E-58 |
| Glyur000606s00017352.2 | PF08458.5 | PH_2 | 306 | 351 | 1.10E-15 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 1.105 |
| SRR1783600 | control | 1.154 |
| SRR1783602 | moderate drought stress | 1.416 |
| SRR1811619 | moderate drought stress | 1.469 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 2.629 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 2.435 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.121 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.116 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 2.918 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 2.988 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 6.811 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 6.717 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 4.400 |
| SRR2868004 | Drought Stress (root) | 3.459 |
| SRR2967015 | Control (root) | 3.801 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 1.748 |
| SRR9715740 | Leaf | 2.402 |
| SRR9715741 | Leaf | 1.388 |
| SRR9715739 | Root | 0.085 |
| SRR9715742 | Root | 0.867 |
| SRR9715743 | Root | 0.564 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.558 |
| SRR8749028 | MeJA induced 9h | 0.437 |
| SRR8749029 | MeJA induced 9h | 0.618 |
| SRR8749030 | Uninduced | 0.520 |
| SRR8749031 | Uninduced | 1.641 |
| SRR8749032 | Uninduced | 2.302 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 1.189 |
| SRR8400027 | Control - Root | 1.654 |