Gene detail

Gene detail information of Glyur000606s00017350.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G28880.1	1.00E-153	casein kinase I-like 3
NR	XP_003526487.1	0	PREDICTED: casein kinase I isoform delta-like isoform X1 [Glycine max]
COG	YP_632759.1	2.00E-19	serine/threonine-protein kinase PKN1 [Myxococcus xanthus DK 1622]
Swissprot	tr\|P42158\|KC1D_ARATH	3.00E-173	Casein kinase I isoform delta-like
trEMBL	tr\|I1K9C5\|I1K9C5_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA06G08880.1}

Sequence

Transcript Sequence

>Glyur000606s00017350.1
AATTTATGCCTCTGTACAAGAAACAGAGTAGGAGTCGGTTATTTGTTTGCGTTTTTGNTGCACACAACACAAACCGTGTTTTTCAATTTCCACATGGAGGCTACCACTACTGGGAAAGCGAGTCCAATGGGTTGGGTTGGGTTGGATTGGGTTAGGTAACAGGAACGTTGAGAGCTTGTACAGGTCAGCAACAGCAGCAACCGAGTTTTTGATAACAAAATCTCCAAATTCCCAAAATTAACCTCGCCTTATAATCTCTTGCTCTTTTCCTCTTCGTTTCGTCCGTTTCCATTTCCGTTGTCCGTCTCTGTCTCCACCGAATCCATTTGCTATTCCGTTCCGTTCCTNACATCTAACAACCTCAAAATCACCGAATCGACAGAAGAATTTCCAAAGCTAAAGCATCGCTCTATTCTCCTTTNTCTCAGCATCCGCACACCAACCGCTAAAACATGGAGAGGATCGTCGGTGGAAAGTTTAAGATTGGTCGGAAAATCGGGAGCGGCTCGTTCGGTGAAATTTATATCGCCTCAAATATCGACACCTCTGAGATCGTCGCCGTCAAGATGGAAAACAAGAAGACCAGACATCCACAACTATTGTACGAGGCCAAATTATATAATATNTTTCAAGGAGAAAGTGGTATTCCAAGTATGAAATGGTGCGGTACTGATGGAGACAATAATGTTCTAGTTATTGATCTTCTGGGTCGGAGTCTGGAGGACCTTTTCGTCTATTGCGGGAGGAAGTTTTCATTAAAAACAGTTTTGATGTTGGCCGACCAGATGCTTTCAAGAATAGAGTACGTGCACTCCAAGGGATTTTTGCATAGAGACATCAAACCAGATAACTTCCTAATGGGTCTTGGGAGAAAAGCAAGTCAGGTTTATATTATTGATTTTGGACTGGGAAAAAGATATCGGGACCCTAGAACAAACAAGCATATTCCTTACAGAGAGAATAAAAACTTAACAGGGACTGCNCGATATGCAAGTTGCAATACTCACATAGGACTTGAGCAAAGTCGTCGGGATGATTTGGAGTCTCTAGGCTATGTTCTTATGTACTTTTTAAGAGGAAGCCTTCCTTGGCAGGGTCTGAAAGCTGTCACCAAGAAGGAAAAGTACGACAAGATTTGTGAGAAGAAGTTATCAACTCCCATTGAGATGCTTTGCAAGTCATATCCCGTGGAGTTCGCNTCTTACTTTCATTATTGTCACTCTTTGACATTTGATCAAGAACCAGATTATGGATTCTTAAAGCGTCTATTTCGTGATTTGTTCACTCGTGAAGGATACGAGTATGACTATTTATTTGACTGGACCATCCTAAAATATCAGCAGACGCAACATACAAAGAGACAAAATCAATCATCTCCTTCAGCTGCTGTGCCTAGCAGTCTAGAACCAGTGGTTGTGGAAAAGCATACAGGAGTCAATGATTCAGCTCAAATTACTGTAACAAAATTGTTAGCCAATCGTGATCACCCAAGTGCACGTATGCAGCCTAAGCCATCCAATATTCACAATCTGAATGCTAAGAATCAGACTGAAAAACATAGTGCGAACAATGGTCCATCCACTTCATCTGTCATGCCCAAATCATCTACAGAAAATGTCTCAAAGCCAGAAAAGCCCACAGGAGCCTCAAACCTGGGTCGTGTGCTTGGGAGTAATTCGTATGTTTCAAGCAGCTGGATTCCTTCACTACGCCGAATTTCTTCAGCCAAATAGTAGACAGGATTTTGGAGAAGGAGAAGTCATTTAGAGCATTTTTTTTTTATTTTCCACCGTTGCAAATGTCATGTCACTCAGTTCACCAGAGGAACAGTAGAATGTTGTGACAAGCAAGATTCCNTGACACGATGAGCTTCCTTCGCATGAAACATTCCTTCCAAATGTAATGGCGGATACATGATGCTAAGTGGGATGGATGCCCCCACCACTTTAAGAGTTGGAAAGAGAGGGAAAGTAACGAGGTTGAACAATTTGGAAGAAAGAGGTATGATGATGGTGGATGTCCACACGAGGCTCAGGGTCATCGGTTGTAGACCTAATTGTGATGAGGCAAACATGCATGAATGAGGGGAAGCCACATTCCTTCATTTTTGTCTCAAGACATTTATCTAATTGCCTTTTGATTTTCTTTCAAGCATTTAGTATACAAATTTGGTCGTCTTTTCTTGTGTACAGTTAAGGTTTGTTAGCANACGAATAGAATCGCATTGTACCCGTTCCCCAGCAAGTGAATTATTCACAAATCAATCCTATTCATTGTTTATTGAAACGAANCAGGTCCATTTGTTGAATTTGGTGCTAGAATCCAACCTAGACTTGCCCTTTGGACTGGGTTTTATTCTAATTTCTAATCAACCTTCACGTGGTAGTTAGATTAGAAGAAGTTCAACAAGAAACAAATAATGAATAATCCAAACTATTTAAATGCCAAATTGCAGTAATCTAACGACCGTGTATATCTTATGTATACATGATCTCTCTCAGTAATCAGCAACAAAATTCAACAATTCCGTAAAAAAAAAAAATCAAAGAAAAGATTGGGTGGAAAAGGAAAGAAAAGAACCCTTTTGTCATATGCTTTTTCAGTTGACCAAAAGAAGGGTCACGCGGGAACACTGTAACCAAAAGAATGACATTGTCCATGGCAAGGTAAAATGTAAAGTTAGCAAACACAGACGCATATGATAAACTTGTATAACCTGGAACCAATTGGCAGAGCTTGTATAAACAGACGTTATAAAGAGATCTATTTTTGTAAAATAATATAAAGAAACAGCGTNCAAATGGGTCCCCAATTTTTACTTTAGGAAGTGTGATAGTGGTGACAAAGGAGAATCCGAGTAATGAATCTAATGATGAACTCCGCTGCCATAAAAACAGGTCTTTAATTCTTTATGCATAAAGCACTAAGAGGTGGAAATCAAAAGAAACAANTTAAGTTGGAGACAAGAATGAATGAATGGCCTTTAAATTGGGTCCTTCGTTAAGCACCAAGAATCTTTTACATTGTTATTTTATTATCCTCAATTAAAAAAAACANTTGGAAACAAATCATATTTTCTTGTTAAATATCTCACTGTTGCTCATCACTCCTCTCATCATCTTGTTCTTGCTTTGAGGTTCTTGCTAGGGTATTAATCTTCAC

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00606	119697	127121	+

Gene family

Gene family	subfamily
Protein Kinases Family	PPC:3.1.1

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006468 protein phosphorylation

molecular_function

GO:0004672 protein kinase activity

GO:0005524 ATP binding

GO:0016772 transferase activity, transferring phosphorus-containing groups

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000606s00017350.1	PF00069.20	Pkinase	9	243	7.00E-39

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	6.716
SRR1783600	control	6.687
SRR1783602	moderate drought stress	12.179
SRR1811619	moderate drought stress	12.509

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	30.597
DRR006520	Root Summer glycyrrhizin high producing strain	30.287
DRR006521	Root Winter glycyrrhizin high producing strain	9.100
DRR006522	Root Winter glycyrrhizin high producing strain	8.903
DRR006523	Root Summer glycyrrhizin low producing strain	58.452
DRR006524	Root Summer glycyrrhizin low producing strain	58.309
DRR006525	Leaf Summer glycyrrhizin high producing strain	8.953
DRR006526	Leaf Summer glycyrrhizin high producing strain	8.954

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	21.589
SRR2868004	Drought Stress (root)	43.326
SRR2967015	Control (root)	50.109

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	60.943
SRR9715740	Leaf	41.396
SRR9715741	Leaf	82.158
SRR9715739	Root	5.358
SRR9715742	Root	32.275
SRR9715743	Root	27.936

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	64.568
SRR8749028	MeJA induced 9h	71.377
SRR8749029	MeJA induced 9h	117.621
SRR8749030	Uninduced	241.944
SRR8749031	Uninduced	407.358
SRR8749032	Uninduced	265.105

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	18.193
SRR8400027	Control - Root	18.110