Gene detail

Gene detail information of Glyur000606s00017347

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G52190.1	5.00E-63	Major facilitator superfamily protein
NR	KHN10207.1	2.67E-147	Putative peptide transporter [Glycine soja]
COG	YP_005371391.1	5.00E-15	proton/peptide symporter family protein [Corallococcus coralloides DSM 2259]
Swissprot	tr\|Q9M817\|PTR6_ARATH	1.00E-76	Protein NRT1/ PTR FAMILY 1.2
trEMBL	tr\|I1JUU4\|I1JUU4_SOYBN	2.00E-147	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA04G08770.1}

Sequence

Transcript Sequence

>Glyur000606s00017347.1
AAAGANACGTACTCGAAAACTACGTAATAACTCTTTTTGCACATGAAGAAAGGAATCCAACAACATAACCGAAAGATCCGCAGAGCAGAGTAGAAGTGTATTCCTTAAGGAAGATCACAATTATCAGTGGAAAGGGTGTCTCAAGCATCACTGGATTCGCCACACCCGAAATTACAGGAGCAAAAAGTGTATGGTTCTCCAAGCAACAGGTGGAGCCAAGCCATTTTGCTTTTTGGCAACACCTTAACTTAAGACGCTCCTGTGCACTCTTCATTCACCACCCCACATACCTCGNACGTCCTGTTGTTGTGTCTCTTCTCTGCAAATGAAAAGCCTCTGATTAGAAACGGAGAAAGTGATGGAACAACCCCTTCTGAGCAAGCGTAACTCCAATGCCAAGGGTGGCTTTAGAACCTTACCATTCATCATAGCAAATGAGGCATGTGAGAGACTTGCGAGCCTTGGGCTAATGCCTAATATGATACTGTATTTGACCAGAGAGTATGGCATGCACACTGCTGAAGCCACTAATTTTCTCTTACTTTGGTCTGCCGCCACCAATTTCATGCCCCTCATTGGTGCTTTCCTTGCAGACTCCTATTTTGGTCGATACCCCATGATTGCTTTCGGATCTGTTGCTAGCCTACTGGTACCAATTTTCTTTCTTTCCTTCCCTCTTGATCCTTGTGATTTTTGTCTTCATTGCTCAGTTCAGAAACTCTTGCCTATGTGTGGCCAATTTACCAACAGCTGTAGCTCCCCNGGAACAATACAGCTTTTGATCTTGCATTCTTCTTTTGCCCTCATGTCCATTGGAGCTGGAGGCATAAGATCATCCTCCTTGGCCTTTGGTGTTGACCAATTAAGCAAGAGGGACGAAGATGCAGGAATCAAANAGAGCTACTTCAGCTGGTACTATGCTGGCGTGGCAGTGTCATCACTCCTAGGCTTAAGTGTTGTTGTCTATATTCAAGATAACATGGGGTGGACAGTGGGATTTGGAGTTCCCGTTATCCTGATGTTTATAGCAACTCTATCATTTTTCTTAGCTACTCCATTTTATGTAATGCTGGATGCTAAGAGGAACTTGCTATGTGGGTTAGCTCAGGTCCTTGTTGCTTGTTACAGAAATAGACTTCTGCAGTTACCACAGGAGGACAGGAATGGTATCTACNACTACCACCATGAAAAGGATTCCAATCTCCTAGTGCCAACTGAAAAGTTAAGGCGCAAAATTGCCATTGAGCAAGGCTATTCAGAAGAACCACAAGCTGTGGTGAACATGTCTGCCATGTGGCTCTTGCCACGTCAGATCCTTGATGGATTGGCTGAGGCATCAGGTGTGGTGGGACAGAATGAGTTTTTTCTCACTGAGTTGCCTCATTCTATGTCTAGCATAGCGTCCACTCTTGCCAGATTGGTGATTGTAAAGACTTACGCTCTATACTAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00606	109452	112841	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006810 transport

cellular_component
GO:0016020 membrane

molecular_function
GO:0005215 transporter activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000606s00017347.1	PF00854.16	PTR2	122	283	1.10E-28

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.858
SRR1783600	control	0.952
SRR1783602	moderate drought stress	0.523
SRR1811619	moderate drought stress	0.574

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	1.519
DRR006520	Root Summer glycyrrhizin high producing strain	1.414
DRR006521	Root Winter glycyrrhizin high producing strain	0.066
DRR006522	Root Winter glycyrrhizin high producing strain	0.094
DRR006523	Root Summer glycyrrhizin low producing strain	1.066
DRR006524	Root Summer glycyrrhizin low producing strain	0.922
DRR006525	Leaf Summer glycyrrhizin high producing strain	3.111
DRR006526	Leaf Summer glycyrrhizin high producing strain	3.144

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	2.428
SRR2868004	Drought Stress (root)	1.598
SRR2967015	Control (root)	1.879

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	2.455
SRR9715740	Leaf	0.864
SRR9715741	Leaf	1.246
SRR9715739	Root	0.575
SRR9715742	Root	0.464
SRR9715743	Root	0.438

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.849
SRR8749028	MeJA induced 9h	1.767
SRR8749029	MeJA induced 9h	0.357
SRR8749030	Uninduced	0.662
SRR8749031	Uninduced	0.314
SRR8749032	Uninduced	0.416

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	2.696
SRR8400027	Control - Root	2.355