Gene detail information of Glyur000606s00017344 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G32770.1 | 0 | tocopherol cyclase, chloroplast / vitamin E deficient 1 (VTE1) / sucrose export defective 1 (SXD1) |
| NR | KEH36047.1 | 0 | tocopherol cyclase [Medicago truncatula] |
| Swissprot | tr|Q94FY7|TOCC_ARATH | 0 | Tocopherol cyclase, chloroplastic (Precursor) |
| trEMBL | tr|A0A072V2G5|A0A072V2G5_MEDTR | 0 | Tocopherol cyclase {ECO:0000313|EMBL:KEH36047.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00606 | 89124 | 93837 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| K09834 | VTE1, SXD1 | EC:5.5.1.24 | Ubiquinone and other terpenoid-quinone biosynthesis | map00130 |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000606s00017344.1 | PF14249.1 | Tocopherol_cycl | 94 | 445 | 1.40E-148 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 8.763 |
| SRR1783600 | control | 8.842 |
| SRR1783602 | moderate drought stress | 7.134 |
| SRR1811619 | moderate drought stress | 6.932 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 7.652 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 7.636 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 2.329 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 2.158 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 4.060 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 4.109 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 37.606 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 36.699 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 11.251 |
| SRR2868004 | Drought Stress (root) | 10.203 |
| SRR2967015 | Control (root) | 9.163 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 21.576 |
| SRR9715740 | Leaf | 24.283 |
| SRR9715741 | Leaf | 18.857 |
| SRR9715739 | Root | 8.897 |
| SRR9715742 | Root | 10.242 |
| SRR9715743 | Root | 8.926 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 8.633 |
| SRR8749028 | MeJA induced 9h | 4.007 |
| SRR8749029 | MeJA induced 9h | 4.330 |
| SRR8749030 | Uninduced | 2.160 |
| SRR8749031 | Uninduced | 0.756 |
| SRR8749032 | Uninduced | 1.608 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 13.508 |
| SRR8400027 | Control - Root | 13.765 |