Gene detail information of Glyur000606s00017340 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G11550.1 | 7.00E-36 | ARM repeat superfamily protein |
| NR | KEH36040.1 | 3.54E-128 | hypothetical protein MTR_3g110138 [Medicago truncatula] |
| Swissprot | tr|Q9FXA4|PUB26_ARATH | 1.00E-17 | U-box domain-containing protein 26 |
| trEMBL | tr|A0A072VCY9|A0A072VCY9_MEDTR | 1.00E-128 | Uncharacterized protein {ECO:0000313|EMBL:KEH36040.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00606 | 69136 | 70092 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| -- | -- | -- | -- | -- | -- |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 2.045 |
| SRR1783600 | control | 1.900 |
| SRR1783602 | moderate drought stress | 8.723 |
| SRR1811619 | moderate drought stress | 7.956 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 6.513 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 6.720 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.117 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.114 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 3.066 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 2.864 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 12.266 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 12.831 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 3.256 |
| SRR2868004 | Drought Stress (root) | 3.428 |
| SRR2967015 | Control (root) | 2.298 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 2.914 |
| SRR9715740 | Leaf | 0.305 |
| SRR9715741 | Leaf | 0.357 |
| SRR9715739 | Root | 1.550 |
| SRR9715742 | Root | 5.199 |
| SRR9715743 | Root | 3.630 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.000 |
| SRR8749028 | MeJA induced 9h | 0.000 |
| SRR8749029 | MeJA induced 9h | 0.064 |
| SRR8749030 | Uninduced | 0.000 |
| SRR8749031 | Uninduced | 0.080 |
| SRR8749032 | Uninduced | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 1.300 |
| SRR8400027 | Control - Root | 1.743 |