Gene detail

Gene detail information of Glyur000606s00017337.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G29000.1	4.00E-111	Tesmin/TSO1-like CXC domain-containing protein
NR	XP_003523732.2	0	PREDICTED: protein tesmin/TSO1-like CXC 5-like [Glycine max]
Swissprot	tr\|Q9SZD1\|TCX5_ARATH	5.00E-137	Protein tesmin/TSO1-like CXC 5
trEMBL	tr\|K7KIV6\|K7KIV6_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA04G08670.2}

Sequence

Transcript Sequence

>Glyur000606s00017337.1
ATGGAGAAGAGAGAAACGACGCTGGATTTAGCTGAGCGGAAATTGTCTAGGCAATTGGATTTCGCTGCCGTATGTGGAGGTGCGGCACACCTGAAACTATCGCCGCCGACGCCACCGTCACTGTCACAATCGATTCTGCGGCCACCGTCGCAGTTGCAGCCGCGTTCTCCGGCGCAATTACAACTGGATTTTCAGTCACTAGGGCAACGACCGTGGTTATATTCACAGCCACAGGGGCAACAGCAGAGAACATCGCAGTCTCAGGTAATGCCGCAATTACAAGCACCACCGCGGCCACAGCTAGTTTCGCCGGTTCATCGATTACCGCACCCCGCGCAGAAACTTCCGGTGAAGACGTTACAAGTGGTGAAGCAAGAGTCTCCTAGATCACAACCTCGAAATAATGTGGAATTAAAGGACAGCACTCCAAAGAAACAAAAGCAATGTAACTGCAAAAATTCTCGATGCCTTAAATTGTACTGCGAGTGCTTTGCAGCTGGGATCTATTGTGATGGCTGTAACTGTCTAAATTGTCATAATAATGTGGACAATGAGGTTGCCCGACAAGAGGCAGTTGGAATAACATTGGAACGCAATCCAAATGCGTTCAGACCTAAAATTGCAAGCAGTCCACAAAAACCACGAGATTCTAAGGAGGATGTGTCTGAAATTCAAGCAATAGGAAAGCACAATAAAGGATGTCATTGCAAAAAATCAGGTTGCCTTAAAAAGTATTGTGAGTGTTTCCANGCCAATATCCTCTGCTCTGAAAATTGTAAATGCATGGACTGCAAGAATTTTGAAGGAAGTGATGAACGAAGTGCAATTTTTCATGAAGAGTATAATCTAGTTCACATCAAACAGGCAGCTAATGCTGCCATTAATGGAAAAGTTGCATCCTCCAGCTATGGAACCGATATAACGCCCAAGAGAAAATTTCAGGAAATATTTTCTGGCAAACCGGTCATAGATCGAACTGTTAACATGACTGCTCGATACCGACAGGAAATTAATCCTATAGCCTCATCGCCTTCATCTCTGTCAGCTCCAATTGTTTCTGACACTGGCAACACAAGAATTTCAGGCTCTTCAAGATCTACATACAGGTCCGTATTGGCTGATGTCCTCCAGACACAGAATGTGAAGAATCTTTGTTCACTCTTTGTTGTTCTCTCCGGAGTAGCTGCAAAGACTAATGCAGAAATGAGAGGGAAAGTAGATCAGCAAATAGAGACTGGGAAATATAAAGCTTCTATTGCTTCATCAGCTCAATCGCTGCAAGACAGTAGAGATGTCATCAAGCCTGTTTGTGATGATCATGTAAATAAAGATGAAGCAGATGCAGTTGATATTAATAGGCCATTGTCACCAGAAACACTTGCTTTGATGTGTGATGAACAGGATGAGATGTTTTTTGGCAATGGTTCTGCAAATGGAGTTGCATGCAACAGCACTTATCAAAACATGATTCAAAAGTCATCTAATTCTGATGGATGCACTGGTGTTTATGCAGAGCAGGAAAGGCTTATCCTAACCAAGTTCTGGGATGTTCTTCGTGGACTTATTACTCTTGGCAGCATAAAAGAAACAATGTGCTCTTCATTAGTCAAGAAAGAGGTGGGAATCAAGAAAGAACCTGCAGACAATGGCGATAGTGTTGCTGAAACTGACATGGGGAGTGATAAGGGAATTCGCAGCAACTGCATTGCAAATTGCCCCATCCCAGCGGTTATTGAAATATCTCAGACCAACTATGGAAAAATTCATGGACATGATAATAATGATCTTTCATCGAGGTCGCCTGAGGATTGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00606	38502	43691	-

Gene family

Gene family	subfamily
Transcription Factors Family	CPP

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

Not hits found.

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000606s00017337.1	PF03638.10	TCR	145	183	4.30E-12
Glyur000606s00017337.1	PF03638.10	TCR	229	268	4.30E-13

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.970
SRR1783600	control	0.943
SRR1783602	moderate drought stress	1.635
SRR1811619	moderate drought stress	1.599

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	1.593
DRR006520	Root Summer glycyrrhizin high producing strain	1.778
DRR006521	Root Winter glycyrrhizin high producing strain	0.212
DRR006522	Root Winter glycyrrhizin high producing strain	0.239
DRR006523	Root Summer glycyrrhizin low producing strain	1.781
DRR006524	Root Summer glycyrrhizin low producing strain	1.830
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.344
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.303

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	1.566
SRR2868004	Drought Stress (root)	1.597
SRR2967015	Control (root)	1.644

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.766
SRR9715740	Leaf	0.413
SRR9715741	Leaf	0.449
SRR9715739	Root	0.084
SRR9715742	Root	0.667
SRR9715743	Root	0.412

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	1.209
SRR8749028	MeJA induced 9h	0.984
SRR8749029	MeJA induced 9h	0.176
SRR8749030	Uninduced	0.083
SRR8749031	Uninduced	0.042
SRR8749032	Uninduced	0.000

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	1.243
SRR8400027	Control - Root	1.045