Gene detail

Gene detail information of Glyur000606s00017336

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G25770.3	1.00E-56	alpha/beta-Hydrolases superfamily protein
NR	XP_004501179.1	4.46E-100	PREDICTED: uncharacterized protein LOC101504608 [Cicer arietinum]
COG	YP_007202234.1	3.00E-37	Dienelactone hydrolase family protein [Singulisphaera acidiphila DSM 18658]
trEMBL	tr\|G7ZWG2\|G7ZWG2_MEDTR	6.00E-95	Putative uncharacterized protein {ECO:0000313\|EMBL:AES83550.1}

Sequence

Transcript Sequence

>Glyur000606s00017336.1
GGCCACGGTAGCTGCGGGGAAGGTAGTACACGATGAAAGTTGCATTTGCGAATCCACTTCCAACGCGGCACGTGCGGACTCTGTTAAGCCACACGTGCGTTGAGCATCCAACTGGAACCGAACCCTGTACGACTAACCCGCCAAAGGTGTTTTTTGATTATAAATGCGGAACTCGTGGCGCACGCATAAGCAGAGCCATAACCCCTCAAGCTCACACTCACACTCACACTCACACTCACACTCACGGCGGAGTCACAAACCGCGAAACCGAAGCCAAAACCAAAATGGGAGAAAAAGAAGCCATTGAAGCTCAAAGCAAGTTCCNATCAGAGTTCCTGCAAGTCCTTCGTAGCAGGCGACCCGCTCAAGTTCCGCTAACCGTCGAACTNGCAAAACCAGTGGCGAATCCTTTTCATCAGAACTCTCCTCCATCTATCGATGAGCAGGAGATTATGAAGTCTTGTCCAAAGTCAGACATTGAAAACCTCGAAGATTCACTCAAGGAGGAGAACCTGTACTTGACTATAGAGGAAGGAGAGCAAGGACGGTTGCCNTTGTTGATTTTGAGTTTGAAGGAAAGCGTTAAGCAGAGAAGGTCTGCAGTTGTATTCCTTCACAGTACAAATAAATATAAAGAGTACCTGCGTCCATTGCTTGAGGCATATGCTTCGCGAGGATATATAGCAATTTCGGTTGATTCTCGTTACCATGGTGAACGTGCGAGCAGCACAACAACCTATCGTGATGCTCTTATTTCTGCATGGAAAACCGGCGAGACAATGCCATTCATATACGACACNGTCTGGGACTTGATTAAATTGGCAGACTATTTAACACAGAGAGAGGATATTGACCCTTCTAGGATAGGAATCACAGGAGTATCGCTTGGAGGTTGGTTGAGAGAAGTTGATAGGAATATGTCAGATGCCAGGTTTATTGTGACTCATCACTAATAAAATTCCTTGATTCAGGAATGCATGCATGGTTTGCTGCAGCTGCTGATACTCGCTATGCTGTGGTTGCTCCTCTGATTGGCGTTCAGGGATTTCGATGGGCCATAGACAACGATAAGTGGCAGGGTCGAGTTGACAGTATAAAGCCTGTTTTTGAGGTGGCTCGTAATGATTTGGGCAAAGATGCTATTGACAAAGAAGTGGTGGAGNAGGTGTGGGACAGGATTGCTCCAGGTTTAGCTTCCCAGTTTGATTCCCCCTACTCAATTCCATCTATTGCACCACGTCCTCTGCTTATTCTCAATGGTGCAGAAGATCCTCGGTGTCCCATTGCAGGCTTGGAAATTCCAAGATCAAAAGCAAGCCAGGCATACGGAGTGTTTCACTGTTTAGATAATTTCAAGTTTATTGCAGAACCTGGAATTGGGCATCAAATAACGAAATTCCAGGTGAAAGAAGCATCTGATTGGTTTGACAGGTTTCTAAAGGCTTAG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00606	32497	36900	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

Not hits found.

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000606s00017336.3	PF00326.16	Peptidase_S9	232	291	3.80E-06
Glyur000606s00017336.4	PF00326.16	Peptidase_S9	299	332	4.10E-05

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	29.601
SRR1783600	control	29.594
SRR1783602	moderate drought stress	25.036
SRR1811619	moderate drought stress	25.106

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	11.755
DRR006520	Root Summer glycyrrhizin high producing strain	12.107
DRR006521	Root Winter glycyrrhizin high producing strain	1.742
DRR006522	Root Winter glycyrrhizin high producing strain	1.604
DRR006523	Root Summer glycyrrhizin low producing strain	8.430
DRR006524	Root Summer glycyrrhizin low producing strain	8.599
DRR006525	Leaf Summer glycyrrhizin high producing strain	28.700
DRR006526	Leaf Summer glycyrrhizin high producing strain	28.087

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	36.522
SRR2868004	Drought Stress (root)	25.771
SRR2967015	Control (root)	25.280

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	43.591
SRR9715740	Leaf	51.345
SRR9715741	Leaf	37.928
SRR9715739	Root	29.357
SRR9715742	Root	43.248
SRR9715743	Root	38.947

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	16.715
SRR8749028	MeJA induced 9h	12.697
SRR8749029	MeJA induced 9h	11.317
SRR8749030	Uninduced	5.313
SRR8749031	Uninduced	4.573
SRR8749032	Uninduced	6.203

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	32.814
SRR8400027	Control - Root	22.881