Gene detail information of Glyur000606s00017335.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G25760.2 | 3.00E-88 | peroxin4 |
| NR | XP_004501180.1 | 7.09E-115 | PREDICTED: protein PEROXIN-4-like [Cicer arietinum] |
| COG | YP_008797956.1 | 2.00E-12 | ubiquitin-conjugating enzyme E2-like protein [Candidatus Caldiarchaeum subterraneum] |
| Swissprot | tr|Q8LGF7|PEX4_ARATH | 1.00E-112 | Protein PEROXIN-4 |
| trEMBL | tr|I3SC14|I3SC14_LOTJA | 9.00E-115 | Uncharacterized protein {ECO:0000313|EMBL:AFK37806.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00606 | 28302 | 31235 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | UBC |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000606s00017335.1 | PF00179.21 | UQ_con | 7 | 147 | 7.30E-46 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 48.269 |
| SRR1783600 | control | 48.303 |
| SRR1783602 | moderate drought stress | 44.118 |
| SRR1811619 | moderate drought stress | 43.567 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 61.517 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 60.635 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 55.691 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 54.605 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 66.217 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 67.041 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 33.664 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 33.813 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 88.495 |
| SRR2868004 | Drought Stress (root) | 86.764 |
| SRR2967015 | Control (root) | 75.303 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 56.883 |
| SRR9715740 | Leaf | 57.400 |
| SRR9715741 | Leaf | 82.323 |
| SRR9715739 | Root | 36.557 |
| SRR9715742 | Root | 50.829 |
| SRR9715743 | Root | 42.240 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 145.861 |
| SRR8749028 | MeJA induced 9h | 120.919 |
| SRR8749029 | MeJA induced 9h | 175.423 |
| SRR8749030 | Uninduced | 91.779 |
| SRR8749031 | Uninduced | 92.382 |
| SRR8749032 | Uninduced | 122.328 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 87.103 |
| SRR8400027 | Control - Root | 88.318 |