Gene detail information of Glyur000606s00017334 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G32760.1 | 3.00E-149 | ENTH/VHS/GAT family protein |
| NR | KHN10222.1 | 0 | TOM1-like protein 2 [Glycine soja] |
| trEMBL | tr|K7KIU9|K7KIU9_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA04G08600.2} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00606 | 19092 | 25661 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000606s00017334.1 | PF00790.14 | VHS | 4 | 130 | 7.70E-33 |
| Glyur000606s00017334.1 | PF03127.9 | GAT | 187 | 270 | 5.90E-20 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 15.405 |
| SRR1783600 | control | 15.377 |
| SRR1783602 | moderate drought stress | 14.925 |
| SRR1811619 | moderate drought stress | 14.676 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 15.993 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 15.670 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 18.389 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 17.807 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 17.908 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 18.436 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 12.179 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 12.145 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 40.686 |
| SRR2868004 | Drought Stress (root) | 46.617 |
| SRR2967015 | Control (root) | 36.023 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 12.212 |
| SRR9715740 | Leaf | 13.026 |
| SRR9715741 | Leaf | 18.547 |
| SRR9715739 | Root | 7.901 |
| SRR9715742 | Root | 16.605 |
| SRR9715743 | Root | 13.452 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 17.787 |
| SRR8749028 | MeJA induced 9h | 30.564 |
| SRR8749029 | MeJA induced 9h | 19.246 |
| SRR8749030 | Uninduced | 22.139 |
| SRR8749031 | Uninduced | 56.015 |
| SRR8749032 | Uninduced | 49.616 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 23.153 |
| SRR8400027 | Control - Root | 20.351 |