Gene detail

Gene detail information of Glyur000605s00024926

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G58370.1	0	glycosyl hydrolase family 10 protein / carbohydrate-binding domain-containing protein
NR	XP_004498933.1	0	PREDICTED: uncharacterized protein LOC101490606 [Cicer arietinum]
COG	YP_001869707.1	7.00E-66	glycoside hydrolase family protein [Nostoc punctiforme PCC 73102]
trEMBL	tr\|K7M5U2\|K7M5U2_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA14G10456.2}

Sequence

Transcript Sequence

>Glyur000605s00024926.1
CAGATAATGAAGGGAAACATATCTGGTCCTAGTAGGAGTGAGGCTACTAATATTATACTAAATCATGACTTTTCTGGAGGGCTGAACTCTTGGTGTCTCAATTGCTGCAATGGCTATGTAATTTCAGCTGAATCNGGTCCTCAAGGTGGAATGACAATGGAGTCAAACGGTAATTATGCTGTTATCACAGACCGTAAGGAATGCTGGCAAGGTCTTGAGCAAGATATCACGGACAAAGTTTCCACNGGTTCCACTTACGTGGTTTCAGCTTATGTTGGAATATCTGCGCTTTCTCAGGGGTCTACTGATGTTCTTGCCACACTGAAACTAGAATATCATGATTCAGCTACTAGCTACTTGTGCATTGGAAGAACTTCTTGTATAAATGGTTGCTGGGAAAAGTTGGAAGGGTCGTTTACATTGTCAACTATGCCTGATCGGGTTATATTTTATTTGGAAGGACCTGCTCCTGAAATTGACCTGCTTATACAATCAGTAGAAATTACCTGCTCCAGTCCAAATGATTGCGAACATAATAAGACAACAAACACAGGATGTGTTTCCACTGATGATGAAAACATCATAATAAACCCTCAGTTTGAGGATGGCCTGAATAATTGGTCTGGAAGAGGCTGCAAGATTGCATTACATGATTCCATGGGAGATGGGAAAATCCTTCCAAAGTCTGGGAAATTCTTTGCATCTGCAACAGAACGCACACAAAGCTGGAATGGAATTCAGCAGGAGATCACCGGACGAGTGCAGCGCAAGCTTGCCTATGAGGTCACTGCTTTAGTTCGGATATTTGGAGTCAATGTCACTACTTCTGATGTACGTGCTACTTTGTGGGTTCAAAGACCAGATCTTCGCGAGCAGTACATAGGCATTGCCAAGTTAGTGTCTATGACTCTATCTTATTTCTTTATTGCCGGGGTTGACATAGATGTGCAGGCAACAGATAAAGATTGGGTTCAAATGCAAGGAAAGTTCCTTCTAAATGGTTCCCCGTCAAAAGTGGTTGTTTATTTTGAAGGTCCCCCTGCAGGCACTGACATTCTTGTCAATACTTTGGTTATAAAGCATGCAGCTAAAACGCCACCTTCAACACCCCCAGATTTTGAGAATGCTGCATTTGGTGTTAATATAATTGAGAACAGCAATCTGGTAAATGGCACCAATGGGTGGTTTCCCCTTGGTAATTGTACTTTGAGCGTTGGAACTGGTTCACCGCGTATAATTCCGCCAATGGCAAGAGACTCTCTTGGCCCTCATGAATCGCTAAGTGGGCGCTACATCCTTGTAACCAATCGCACACAAACATGGATGGGTCCTGCTCAGATGATCACTGAGAAATTGAATCTCTTTTTAACTTACCAAGTATCTGCTTGGGTCCGGATTGGTTCCGGATCAACTGGGCCTCAGAATGTGAATATTGCCCTTAGTGTTGACAACCAGTGGGTCAATGGAGGACAAACTGAGGTTACTGATGCCAGATGGCATGAAATTGGTGGGTCCTTTAGAATTGAAAAGCAGCCATCTAAGGTTATGGTTTATNTTCAAGGCCCTGCTTCTGGTATAGACTTAATGGTTGCCGGGGTTCAAATTTTTCCTGTCGATAGGCAGGCAAGGTTTANATATTTAAGGAGGCAGACAGACAAGATCCGTAAGCGCGATGTTATCCTAAAATTTTCCGGGCTGGAATCAAGCGGGTACACCTTTGTGAAAGTTAAACAAATACAAAACGATTTCCCAATTGGATCATGCATCAATAGAACAAATATAGACAATGAAGATTTTGTTGACTTCTTTGTGAAACATTTTAACTGGGCTGTATTTGGGAATGAGCTGAAGTGGTATTGGACTGAGCCACAACAAGGGAATTTGAACTACAAGGATGCTGATGAAATGTTAGACTTGTGTCAGAAGAACAAGATAGACACCCGTGGTCATTGCATCTTCTGGGAAGTTGATGGCACTGTCCAGCAATGGATCAAATCACTGAACAAAAACGATTTGGCAACAGCCGTCCAAACCCGCTTAACCAGCTTATTGACTCGCTACAAGGGAAAGTTCAGGCACTATGATGTCAATAACGAAATGTTGCATGGTTCATTTTATCAGGATAGACTCGGTAAAGATATCAGGGCAAACATGTTCAAGACTGCACACCAACTAGATCCATCTGCTACCCTTTTTGTGAATGACTACCATGTTGAAGATGGATGTGACACTAGATCATCTCCAGAAAAATACATACAACACATTCTTGATTTGCAAGGGCAAGGTGCNCCGGTCGGGGGAATCGGAATTCAAGGTCACATTGATAGTCCTGTGGGGCCTATCGTTTGTTCCGCGCTTGATAAATTGGGTACTCTTGGTTTACCAATCTGGTTTACTGAGCTTGATGTGTCTTCCACTAATGAATATGTTAGAGGTGATGATTTGGAGGTTATGATGCGGGAAGCTATGGCACACCCTTCCATAGATGGTGTAATGCTATGGGGATTCTGGGAATTGTTTATGAGCCGGGACAGCTCACACTTGGTGAATGCAGAAGGTGACATCAACGAAGCTGGGAAAAGGTTCCTTGATCTTAAACAAGAGTGGTTATCTCGTAGCCATGGTCATGTTGATGAGCAAGGGCAATTCAGCTTCAGGGGATTCAGTGGTACATACAATGTGGAAGTTGTGACCTTTGAAAAGAAAGTTTCCAAGACATTTGTTGTTGANAAGGGTGACTCGTCATTGGTGGTAGCAATCGACTTGTAAGCGAACCAGTATGATTGGTTTGGTTGAAATGTCATGCTTTCATGGTTTTAAACATTTCATTCATTTTTTATTTCATGCGGTTTGCTGAAAATACCAAGTT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00605	114982	119145	-

Gene family

Gene family	subfamily
Carbohydrate-Active enzymes Family	CBM22,CBM22,CBM22,GH10

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0005975 carbohydrate metabolic process

molecular_function

GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds

GO:0016798 hydrolase activity, acting on glycosyl bonds

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000605s00024926.1	PF02018.12	CBM_4_9	15	154	2.00E-21
Glyur000605s00024926.1	PF02018.12	CBM_4_9	191	346	3.50E-15
Glyur000605s00024926.1	PF02018.12	CBM_4_9	379	522	9.90E-18
Glyur000605s00024926.1	PF00331.15	Glyco_hydro_10	576	843	9.40E-60
Glyur000605s00024926.2	PF02018.12	CBM_4_9	15	154	2.00E-21
Glyur000605s00024926.2	PF02018.12	CBM_4_9	191	329	4.20E-19
Glyur000605s00024926.2	PF02018.12	CBM_4_9	362	505	9.60E-18
Glyur000605s00024926.2	PF00331.15	Glyco_hydro_10	559	826	9.10E-60

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	2.534
SRR1783600	control	2.617
SRR1783602	moderate drought stress	4.529
SRR1811619	moderate drought stress	4.483

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	4.730
DRR006520	Root Summer glycyrrhizin high producing strain	4.806
DRR006521	Root Winter glycyrrhizin high producing strain	1.360
DRR006522	Root Winter glycyrrhizin high producing strain	1.313
DRR006523	Root Summer glycyrrhizin low producing strain	4.824
DRR006524	Root Summer glycyrrhizin low producing strain	4.803
DRR006525	Leaf Summer glycyrrhizin high producing strain	3.059
DRR006526	Leaf Summer glycyrrhizin high producing strain	3.062

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	9.932
SRR2868004	Drought Stress (root)	8.634
SRR2967015	Control (root)	8.094

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	1.150
SRR9715740	Leaf	1.363
SRR9715741	Leaf	1.783
SRR9715739	Root	0.321
SRR9715742	Root	1.889
SRR9715743	Root	2.262

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	2.778
SRR8749028	MeJA induced 9h	2.389
SRR8749029	MeJA induced 9h	1.815
SRR8749030	Uninduced	3.112
SRR8749031	Uninduced	1.645
SRR8749032	Uninduced	1.327

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	4.847
SRR8400027	Control - Root	5.175