Gene detail

Gene detail information of Glyur000605s00024916

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G58520.1	5.00E-146	lipases;hydrolases, acting on ester bonds
NR	XP_007136794.1	0	hypothetical protein PHAVU_009G074900g [Phaseolus vulgaris]
Swissprot	tr\|F4IBD7\|CSCLA_ARATH	0	CSC1-like protein RXW8
trEMBL	tr\|V7AW01\|V7AW01_PHAVU	0	Uncharacterized protein {ECO:0000313\|EMBL:ESW08788.1}

Sequence

Transcript Sequence

>Glyur000605s00024916.1
GTGGGTTGGCTGGAGAATCCGTTACTCTTGCTATTTGTGTGTGTTGGCTGGCGGCAACTTTTGAAGGAGCGCGAGGCAAATAACAATGCGTTGCGAATAATTGAGACCCCTTTCATGCCAATGCGATTCCCCGTTTAACTGTCTGTCATCTTTTGTTTTTTGTTTTTTATAACTAACGTCTGTCGTTCTCTTTTCAAGTTTTAAGACCCACAAAAGATANAACGCAAACCTGCTAGGGTTTCAAATTTTCTTTGTTTCCTTCGAATCAGTATTTGTATAAAACCTTAACGAGAAGGCGAAGACCAATCCACGTTCTCTTTTCCTCCACATTTTGCCTTTTCCTACCACTGTTTCCCTAATCGCTCTTCATCGACAATTTGTTCATCCGTACGTGTGCAGGTGATGAATATGACTTTGATGTCTTATGTCTGNCTTCTTGGGCAATGAGATGAGTCAAGTTTGCCAATACAGTGGGCAGAGATGGACATTGCCGCTCTTTTAACTTCTGCCGGAATCAACATCACCGTGTGTGTGGTGCTCTTTTCACTCTACTCAATTCTAAGGAAACAGCCCGGCCATGTTAAAGTGTACTTTGGAAGAAGACTGGCCTCTCGGCGTTCGAAAAGCCTTGACTTTTGCTTGGAAAGATTTGTTCCTTCTCCTACATGGGTAATGAAAGCATGGGAAACAACACAAGATGAAATACTCACTGTTGGGGGCTTGGATGCTGTGGTTTTTTGCAGAATGGTTGTGTTCAGCATTCGAGTATTTTCTGTAGCTGCTGTCATCTGCACTATTTTAGTGCTTCCAGTAAATTACTATGGTCAGAACAGGATACATAAGAATATACCTTTTGAGTCACTGGAAGTATTTACCATTGAGAATGTCCAGGAACGATCAAGATGGCTTTGGACTCATTGTCTCGCATTATACATCATAACTTTGTCAGCTTGTTCTCTTCTTTACTTCGATGATGCAGAATATGCATGTAAGATGCTCAGTGGTGGTCTGGAACAAACTTGTAAGCCAAGCATGGCGCAATGTTACTTTTGTGGAGGAACCACTAATTTTAAGATTATTTCTAATGAAATAGATAGTATACATGCGAGAACAGGCTACAGTGACATGAATATAGATGCAAGAAGAAAGGAATGTGCATCCGCTTTCGTGTTCTTTAAAAGTCGTTATGCTGCTCTTATGGCTGCCCAAAGTCTTCAAACATCAAATCCTATGTTATGGGTCACAGATCAAGCTCCTGAACCACATGATGTTTACTGGTCCAACCTTTGCATACCATACAGGCAACTTTGGCTCCGTAAGATAACTACATTTGTGGCATCTATCACCTTCGTGCTTGTATTCCTCATCCCTGTCACATTTGCACAAGGCTTGACTCAACTAGAGCAGCTTCAGAAAATGTTCCCTTTTCTGGCAGGGATTCAAAATAAAGTGAGACAATATTCTTTTTCCAGGAACTTTATGATTAAGCTGGTGACTGGTTACTTGCCAAGTGTGATTTTGGTTTTATTTTTATATGCTGTTCCACCAGTGATGATGCTATTTTCAGCAGTGGAGGGATGTATTTCCCGTAGCGGAAGGAAGAAAAGTGCATGCTGCAAAGTTTTGTACTTCACAATTTGGAATGTGTTTTTTGTTAATGTTTTTGCCGGGTCTGTTATCAGCCAACTCTCGGTCTTTACTAGTATAACAGAACTACCTGCCCAACTTGCCAAGGCAGTCCCAGCGCAGGCTACCTTCTTCACAACATATGTTCTATCATCCGGTTGGGCAAGTTTGGCATTTGAAATTATACAACTGTTTCCTCTTTTCTGCAACCTGTTTCAGAGATACCTACTCTGTTCTGGGGAAGATTCAATGAACGGCAACCTAACTTTTCCATACCACACAGAAGTTCCAAGGATCTTACTGTTTGGATTCCTCGGGTTCACCTGTTCCATTCTGGCACCGCTGATACTGCCCTTCTTATTATTCTACTTTTTCCTTGCATATCTCGTTTACCGAAACCAGATTCTCAATGTGTATATTACAAAATATGATGGAGGGGGACACTTGTGGCCCATTGCTCACAACACTACGGTCTTTTCATTGCTTGTCGCTCAACTTATTGCACTTGGGGTGTTTGGACTAAAACAATCAACAATTGCATCTGGATTTACCATTCCACTGTTGATTGGCACAATTCTATTTCACCAATACTGTAGGCAGCGATTTCTCCCCGTATTTAAGAACAATGCAACGCAGGTTCTTATTGACATGGATCGGAGAGATGAGATTTGCGGGAGGATGGTAGAGATTTATGAACAATTGCATTCAGCCTACTGCCAGTTCACTAGTTCTAGTCCATCCGAATGCTTCAGTAGTCATCAAGGGGACAGGGAGCATGTTCAGACTCCAGAAGATTTGGAGAGAGGCAAAGAAATCAGCCAAGAAGATCTAACATGGCAAGTTCATCGGTAG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00605	49447	56664	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

cellular_component
GO:0016020 membrane

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000605s00024916.1	PF13967.1	RSN1_TM	5	162	1.40E-34
Glyur000605s00024916.1	PF02714.10	DUF221	228	554	7.20E-87

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.800
SRR1783600	control	0.820
SRR1783602	moderate drought stress	1.159
SRR1811619	moderate drought stress	1.150

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.449
DRR006520	Root Summer glycyrrhizin high producing strain	0.454
DRR006521	Root Winter glycyrrhizin high producing strain	0.398
DRR006522	Root Winter glycyrrhizin high producing strain	0.426
DRR006523	Root Summer glycyrrhizin low producing strain	0.813
DRR006524	Root Summer glycyrrhizin low producing strain	0.727
DRR006525	Leaf Summer glycyrrhizin high producing strain	3.028
DRR006526	Leaf Summer glycyrrhizin high producing strain	3.024

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	3.141
SRR2868004	Drought Stress (root)	2.964
SRR2967015	Control (root)	2.927

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	2.857
SRR9715740	Leaf	2.954
SRR9715741	Leaf	1.983
SRR9715739	Root	0.254
SRR9715742	Root	1.415
SRR9715743	Root	1.110

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	1.642
SRR8749028	MeJA induced 9h	1.101
SRR8749029	MeJA induced 9h	0.987
SRR8749030	Uninduced	0.247
SRR8749031	Uninduced	0.237
SRR8749032	Uninduced	0.257

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	3.886
SRR8400027	Control - Root	3.438