Gene detail information of Glyur000604s00024572.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G67090.1 | 2.00E-74 | ribulose bisphosphate carboxylase small chain 1A |
| NR | AFK48034.1 | 4.17E-111 | unknown [Lotus japonicus] |
| COG | NP_682294.1 | 4.00E-30 | ribulose bisphosphate carboxylase small subunit [Thermosynechococcus elongatus BP-1] |
| Swissprot | tr|O65194|RBS_MEDSA | 3.00E-108 | Ribulose bisphosphate carboxylase small chain, chloroplastic (Precursor) |
| trEMBL | tr|I3T692|I3T692_LOTJA | 2.00E-111 | Ribulose bisphosphate carboxylase small chain {ECO:0000256|RuleBase:RU003627} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00604 | 120390 | 122912 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| K01602 | rbcS | EC:4.1.1.39 | Carbon metabolism | map01200 |
| Glyoxylate and dicarboxylate metabolism | map00630 | |||
| Carbon fixation in photosynthetic organisms | map00710 |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000604s00024572.1 | PF12338.3 | RbcS | 1 | 43 | 2.90E-20 |
| Glyur000604s00024572.1 | PF00101.15 | RuBisCO_small | 66 | 175 | 2.60E-41 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.484 |
| SRR1783600 | control | 0.509 |
| SRR1783602 | moderate drought stress | 0.479 |
| SRR1811619 | moderate drought stress | 0.563 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 6.196 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 6.391 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 5.152 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 5.593 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 5.356 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 5.090 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 22480.129 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 22832.924 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 93.975 |
| SRR2868004 | Drought Stress (root) | 101.233 |
| SRR2967015 | Control (root) | 14.690 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 11851.450 |
| SRR9715740 | Leaf | 12604.613 |
| SRR9715741 | Leaf | 7709.522 |
| SRR9715739 | Root | 2.347 |
| SRR9715742 | Root | 7.181 |
| SRR9715743 | Root | 5.271 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 20.543 |
| SRR8749028 | MeJA induced 9h | 42.065 |
| SRR8749029 | MeJA induced 9h | 17.578 |
| SRR8749030 | Uninduced | 6.806 |
| SRR8749031 | Uninduced | 0.728 |
| SRR8749032 | Uninduced | 10.114 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 6.173 |
| SRR8400027 | Control - Root | 5.379 |