Gene detail information of Glyur000604s00024571 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G02550.1 | 2.00E-79 | LOB domain-containing protein 41 |
| NR | XP_004516674.1 | 2.56E-136 | PREDICTED: LOB domain-containing protein 41-like [Cicer arietinum] |
| Swissprot | tr|Q9M886|LBD41_ARATH | 1.00E-99 | LOB domain-containing protein 41 |
| trEMBL | tr|I1N6Q1|I1N6Q1_SOYBN | 2.00E-133 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA19G06280.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00604 | 108341 | 110009 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | LOB |
| EAR motif-containing Proteins | LOB |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000604s00024571.1 | PF03195.9 | DUF260 | 4 | 107 | 2.10E-28 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 4.726 |
| SRR1783600 | control | 4.721 |
| SRR1783602 | moderate drought stress | 2.119 |
| SRR1811619 | moderate drought stress | 2.146 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 14.339 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 14.361 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 486.344 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 475.100 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 3.738 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 3.558 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 1.262 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 1.240 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 6.463 |
| SRR2868004 | Drought Stress (root) | 7.038 |
| SRR2967015 | Control (root) | 9.792 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 4.507 |
| SRR9715740 | Leaf | 5.504 |
| SRR9715741 | Leaf | 2.519 |
| SRR9715739 | Root | 77.441 |
| SRR9715742 | Root | 41.296 |
| SRR9715743 | Root | 49.536 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 129.784 |
| SRR8749028 | MeJA induced 9h | 137.809 |
| SRR8749029 | MeJA induced 9h | 104.274 |
| SRR8749030 | Uninduced | 16.240 |
| SRR8749031 | Uninduced | 19.490 |
| SRR8749032 | Uninduced | 50.413 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 17.529 |
| SRR8400027 | Control - Root | 50.769 |