Gene detail

Gene detail information of Glyur000604s00024562

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G16040.1	5.00E-40	Regulator of chromosome condensation (RCC1) family protein
NR	XP_002516745.1	1.28E-54	Ran GTPase binding protein, putative [Ricinus communis]
COG	YP_003589725.1	1.00E-06	S-layer protein [Kyrpidia tusciae DSM 2912]
Swissprot	tr\|Q9FN03\|UVR8_ARATH	5.00E-07	Ultraviolet-B receptor UVR8
trEMBL	tr\|B9RSM6\|B9RSM6_RICCO	5.00E-55	Ran GTPase binding protein, putative {ECO:0000313\|EMBL:EEF45643.1}

Sequence

Transcript Sequence

>Glyur000604s00024562.1
TTTTTGTATTCAACAATTAGAATTTAGCTGCAGCTTTTGAGTTTGAGTCGTCAACCTCAGTGGGACTGTCAATTTGTCAATCTGATCATCACTCTCACACACTCACTCAACTAAAGCTAAAGTTGTTTGTTTCACAACCTCTGTATCAGCCACTATTCTCATGGCGATCGATTCCAATTCCTCCATCATTGCTTGGGCTCTGGGGAAGATGGGCAACTAGGAATTGGTAGCAACGAAGAGAAGGAATGGGTCTGTCTCGTCAAAGCTCTCCCTTCCCAACGTGTCCGCTCCGTCGTCGCTGGTAGCAGAAACTCCCTCGCCATTTGCCACGACGGCAAGTTGTTTACATGGGGTTGGAACCAAAGGGGAACACTTGGACACCCACCTGAGACCAAGACTGAAAACATTCCCAGCCAGGTCAAGGCACTTGCCCATGTGAAAATTGTTCAGGCGGCTATTGGTGGAAATGAATATGGGCAGTGCGGTGAAGAACCCGAGCGCAAGGATGACANTGGTAGACCTCTGAGGAGAGATATAGTGATCCCTCAGCGTTGTGCTCCTAAGCTTGTTGTTCGACAGATTGCTGTTTGCTATTTTTCTAATTGCTTGAGGTGCAGGTTGCTGCAGGAGGAACTCACTCAGTGTAAACAGATTTCAGTTCCTGTTCGGGTGCAAGGTCTTGAAAATGTGAAGCTTATAGCAGTCGGGGCATTTCATAATTTGGCTCTTCAAGAGGATGGAACTTTATGGGCATGGGGTANTAATGAATATGGACAACTTGGAACTGGAGATACCCAGCCAAGATCACAACCTATTCCTGTGCAAGGGCTTTCGGGACTCACTTTGGTAGATATTGCAGCTGGTGGATGGCACTCTACTGCATTGACAGATGAAGGAGAGGTATATGGCTGGGGAAGGGGGGAACATGGCAGGCTTGGATTTGGTGATAGCGATAAGAGCAGTAAAATGGTACCTCAGAGGGTTCAGCTTTTAGCTGGGGAAGATATTGTTGGGGAAGATATTGTTCAGGTGTCCTGTGGAGGTACTCATTCAGTTGCATTAACCCGGGATGGGCGCATGTTTTCTTTTGGTAGAGGTGACCATGGACGTCTTGGATATGGGAGGAAAGTCACAACTGGTCAACCAATGGAGGTACCTATAAACATCCCTCCTCCACAGAATCTCAGTGGCAGTGCTGCAGCTGAAGGACATTGGATAGCCAAACTCGTCGCTTGTGGCGGCCGCCATACTTTGGCAATGGTAGAATGGAAAGTAGATGAATCTAAAGATTGACTCTCATGAATGAATCACTA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00604	38396	45059	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

Not hits found.

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000604s00024562.1	PF00415.13	RCC1	2	32	8.60E-06
Glyur000604s00024562.1	PF00415.13	RCC1	35	98	5.10E-13

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	49.279
SRR1783600	control	50.247
SRR1783602	moderate drought stress	54.041
SRR1811619	moderate drought stress	56.004

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	54.539
DRR006520	Root Summer glycyrrhizin high producing strain	58.930
DRR006521	Root Winter glycyrrhizin high producing strain	14.038
DRR006522	Root Winter glycyrrhizin high producing strain	13.106
DRR006523	Root Summer glycyrrhizin low producing strain	42.351
DRR006524	Root Summer glycyrrhizin low producing strain	43.444
DRR006525	Leaf Summer glycyrrhizin high producing strain	29.623
DRR006526	Leaf Summer glycyrrhizin high producing strain	29.763

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	65.762
SRR2868004	Drought Stress (root)	62.171
SRR2967015	Control (root)	61.810

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	33.685
SRR9715740	Leaf	45.622
SRR9715741	Leaf	42.033
SRR9715739	Root	54.758
SRR9715742	Root	78.714
SRR9715743	Root	69.062

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	43.415
SRR8749028	MeJA induced 9h	39.361
SRR8749029	MeJA induced 9h	35.004
SRR8749030	Uninduced	16.488
SRR8749031	Uninduced	6.185
SRR8749032	Uninduced	10.637

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	79.066
SRR8400027	Control - Root	77.114