Gene detail

Gene detail information of Glyur000604s00024560

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G77940.1	5.00E-51	Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein
NR	XP_006298495.1	6.81E-102	hypothetical protein CARUB_v10014571mg [Capsella rubella]
COG	YP_003669646.1	5.00E-20	50S ribosomal protein L7Ae/L30e/S12e/Gadd45 [Staphylothermus hellenicus DSM 12710]
Swissprot	tr\|O49884\|RL30_LUPLU	9.00E-71	60S ribosomal protein L30
trEMBL	tr\|R0I4W6\|R0I4W6_9BRAS	3.00E-102	Uncharacterized protein {ECO:0000313\|EMBL:EOA31393.1}

Sequence

Transcript Sequence

>Glyur000604s00024560.1
CAGCTGCAAAGGAACAAGCCCAGAAAGGCCCAAAAGCCTACAACAAAGGATCAGCTTTTTGGATGAATAACTGGGCTTGCAGCTCCAAGCCCAGCGCAGAAANGAAACCCGAAAGCTAGCTTATGTACCTGAAGGGCTGAAAGAAAGAGGGGCGAAAGAACTAGGGTTTATTGATTCCGACCATCTTCTCTTTCTGCAGAGAAACCCTAAATCTCTCCACCACCATGGTTGCCGCTAAGAAAACCAAGAAGACCCATGAGAGTATTAACAACAGGCTCGCTCTTGTCATGAAGAGTGGGAAGTACACTCTTGGTTATAAAACTGTTCTNAAATCCCTCAGAAACTCCAAAGGGAAATTGATTATCATTGCCAACAATTGTCCACCATTGAGGAAGTCTGAAATAGAGTATTATGCTATGTTGGCTAAGACAATGTGGATTTGGGCACGGCTTGTGGCAAGTACTACAGAGTGTGCTGTCTCAGCATTATTGATCCTGGTGATTCGGATATCATTAAGACAATGCCTAATGAGCAGTAGAGTGAAGAAGACCCATGAGAGTATTAACAACAGGCTTGCTCTTGTCATGAAGAGTGGCAAGTACACTCTTGGTTATAAAACTGTTCTCAAATCCCTTAGAAACTCTAAAGGGAAGCTAATTATCATTGCTAACAATTGCCCTCCTTTGAGGAAGTCTGAAATAGAGTACTATGCTATGTTGGCTAAGGTTGGAGTTCATCACTATAACGGGAACAATGTGGATTTGGGCACNGCTTGTGGGAAGTACTACAGAGTTTGCTGTCTCAGCATTATTGATCCTGGTGATTCTGATATCATTAAGACAATGCCTAGCGAGCAATAGAGTTGCATCAATCAAGTCCTTGATTTTGGTCCATTTAGAACTGGTTGTTTTTGTTAGTGTTTTCTGTTGATTCAAACGTTGTTGATTTAATGTAGACTTGAACTATCTGGAAGTAAGGAGGATACACATCTATTGTTTTTGGTTATTTTCGAGCATCAAGTTATTTTGACT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00604	29602	35152	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006412 translation

cellular_component

GO:0005622 intracellular

GO:0005840 ribosome

molecular_function
GO:0003735 structural constituent of ribosome

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000604s00024560.1	PF01248.21	Ribosomal_L7Ae	13	65	1.50E-13
Glyur000604s00024560.1	PF01248.21	Ribosomal_L7Ae	112	204	8.90E-25

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	91.194
SRR1783600	control	92.822
SRR1783602	moderate drought stress	51.787
SRR1811619	moderate drought stress	51.039

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	129.253
DRR006520	Root Summer glycyrrhizin high producing strain	128.107
DRR006521	Root Winter glycyrrhizin high producing strain	71.045
DRR006522	Root Winter glycyrrhizin high producing strain	68.718
DRR006523	Root Summer glycyrrhizin low producing strain	96.292
DRR006524	Root Summer glycyrrhizin low producing strain	98.629
DRR006525	Leaf Summer glycyrrhizin high producing strain	39.887
DRR006526	Leaf Summer glycyrrhizin high producing strain	39.357

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	250.418
SRR2868004	Drought Stress (root)	162.411
SRR2967015	Control (root)	155.643

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	63.300
SRR9715740	Leaf	86.359
SRR9715741	Leaf	57.148
SRR9715739	Root	74.365
SRR9715742	Root	55.830
SRR9715743	Root	57.295

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	170.943
SRR8749028	MeJA induced 9h	83.722
SRR8749029	MeJA induced 9h	119.465
SRR8749030	Uninduced	40.900
SRR8749031	Uninduced	21.575
SRR8749032	Uninduced	32.141

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	185.033
SRR8400027	Control - Root	165.984